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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0825900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function Cys-rich family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0215) R2 : 0.000193
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0134 (0.0452) R2dN8 : 0.000249 R2N8 : 0.000193
σ : 0.404
deviance : 74.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
68.5 0.389 3.29 0.76 0.141 -0.293 -0.0408 1.27 0.224 6.94 18.6 6068 -- --
69.6 0.389 3.33 0.46 0.142 -0.414 -0.0692 -- 0.161 6.54 3.241 9273 -- --
68.5 0.385 3.29 0.758 0.141 -0.293 -- 1.26 0.224 7.02 18.49 6067 -- --
69.61 0.389 3.33 0.459 0.142 -0.413 -- -- 0.162 6.63 7.11 9277 -- --
69.51 0.388 3.29 0.772 -- -0.294 -- 1.28 0.231 -- 18.5 6209 -- --
72.33 0.399 3.36 0.234 0.145 -- -0.0322 -- 0.0369 6.97 -- -- -- --
72.33 0.398 3.36 0.234 0.145 -- -- -- 0.037 7.05 -- -- -- --
70.65 0.391 3.34 0.464 -- -0.417 -- -- 0.166 -- 7.225 9273 -- --
73.02 0.398 3.36 -- 0.136 -0.166 -- -- 0.047 6.61 18.7 2213 -- --
73.44 0.4 3.36 0.236 -- -- -- -- 0.0396 -- -- -- -- --
73.77 0.402 3.37 -- 0.147 -- -- -- 0.011 6.95 -- -- -- --
73.9 0.4 3.36 -- -- -0.176 -- -- 0.0457 -- 21.2 2054 -- --
74.91 0.404 3.37 -- -- -- -- -- 0.0134 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.06 precipitation 0.1 10 < th dose independent rect. 3 23
2 64.06 precipitation 0.1 10 < th dose dependent rect. 3 23
5 65.44 humidity 80.0 10 > th dose independent rect. 2 1
6 65.49 wind 3.0 10 < th dose independent rect. 2 1
7 65.50 atmosphere 1010.0 30 < th dose dependent rect. 2 1
8 65.51 wind 3.0 10 < th dose dependent rect. 2 1
13 65.58 humidity 80.0 10 > th dose dependent rect. 2 1
15 65.61 temperature 10.0 10 > th dose dependent rect. 2 1
22 65.67 temperature 10.0 10 > th dose independent rect. 2 1
24 65.67 temperature 30.0 10 < th dose independent rect. 2 1
25 65.67 humidity 50.0 10 > th dose independent rect. 2 1
28 65.67 atmosphere 995.0 10 > th dose independent rect. 2 1
29 65.67 atmosphere 1010.0 10 < th dose independent rect. 2 1
31 65.67 radiation 1.0 10 < th dose independent rect. 2 1
36 65.67 precipitation 0.1 10 < th dose independent rect. 2 1
37 65.67 temperature 10.0 10 > th dose independent rect. 3 23
38 65.67 radiation 1.0 10 < th dose dependent rect. 2 1
43 65.67 precipitation 0.1 10 < th dose dependent rect. 2 1
61 65.93 temperature 30.0 30 < th dose dependent rect. 2 1
89 65.97 atmosphere 995.0 10 > th dose dependent rect. 2 1
90 65.98 wind 1.0 30 > th dose independent rect. 2 1
93 66.00 atmosphere 1005.0 10 > th dose independent rect. 2 1
107 66.17 wind 9.0 10 < th dose independent rect. 3 23
109 66.27 precipitation 0.1 10 < th dose independent rect. 21 23
110 66.27 precipitation 0.1 10 < th dose dependent rect. 21 23
114 66.39 temperature 10.0 30 > th dose dependent rect. 3 23
115 66.39 temperature 10.0 30 > th dose dependent rect. 21 23
116 66.43 radiation 40.0 4320 < th dose independent rect. 15 8
117 66.43 radiation 40.0 4320 < th dose independent rect. 15 13
119 66.47 radiation 1.0 14400 > th dose independent rect. 18 13
121 66.51 radiation 40.0 4320 < th dose independent rect. 15 2
124 66.54 wind 3.0 43200 < th dose dependent rect. 9 2
127 66.55 radiation 40.0 4320 < th dose independent rect. 15 4
129 66.58 radiation 1.0 14400 > th dose independent rect. 5 2
130 66.58 radiation 1.0 14400 < th dose independent rect. 5 2
131 66.58 atmosphere 995.0 10 > th dose independent rect. 3 23
135 66.62 radiation 1.0 14400 < th dose independent rect. 3 4
138 66.62 radiation 1.0 14400 < th dose independent rect. 21 10
197 66.86 wind 5.0 14400 < th dose dependent rect. 11 1
213 67.00 wind 1.0 14400 > th dose dependent rect. 11 1
214 67.01 radiation 1.0 14400 > th dose independent sin 10 NA
217 67.01 radiation 1.0 14400 < th dose dependent rect. 6 1
220 67.03 wind 3.0 43200 < th dose independent rect. 9 5
224 67.05 radiation 1.0 14400 < th dose independent sin 10 NA
225 67.05 wind 3.0 43200 < th dose independent rect. 9 1
267 67.11 wind 9.0 10 > th dose independent rect. 18 1
270 67.11 wind 9.0 10 > th dose dependent rect. 18 1
273 67.12 wind 3.0 43200 > th dose independent rect. 9 1
282 67.14 wind 3.0 43200 < th dose independent rect. 20 1
285 67.14 wind 3.0 43200 > th dose independent rect. 9 5
294 67.15 radiation 1.0 30 > th dose dependent rect. 18 1
316 67.19 radiation 40.0 4320 < th dose independent rect. 15 18
318 67.19 radiation 1.0 14400 < th dose dependent rect. 3 4
325 67.20 humidity 90.0 43200 > th dose dependent rect. 7 1
345 67.21 wind 3.0 43200 > th dose independent rect. 20 1
374 67.23 wind 3.0 14400 < th dose independent rect. 11 1
375 67.23 wind 3.0 14400 > th dose independent rect. 11 2
402 67.26 radiation 1.0 14400 > th dose independent rect. 18 1
423 67.27 wind 1.0 43200 < th dose dependent rect. 14 1
425 67.27 wind 9.0 30 > th dose dependent rect. 18 8
474 67.30 radiation 1.0 14400 > th dose independent rect. 5 9
477 67.30 radiation 1.0 14400 < th dose independent rect. 5 9
533 67.32 wind 9.0 10 > th dose dependent rect. 18 4
583 67.33 wind 9.0 90 > th dose dependent rect. 18 5
614 67.34 wind 9.0 43200 < th dose dependent rect. 9 1
619 67.35 humidity 90.0 43200 < th dose independent rect. 7 1
623 67.35 wind 1.0 43200 > th dose dependent rect. 9 1
631 67.35 radiation 1.0 14400 < th dose dependent rect. 16 16
688 67.39 radiation 1.0 14400 < th dose dependent sin 10 NA
706 67.40 humidity 90.0 43200 > th dose independent rect. 7 1
750 67.42 humidity 90.0 43200 > th dose dependent rect. 6 6
752 67.42 wind 1.0 43200 > th dose dependent rect. 8 9
772 67.44 radiation 1.0 14400 > th dose independent no NA NA
775 67.44 radiation 1.0 14400 > th dose independent rect. 5 14
836 67.44 wind 1.0 43200 > th dose dependent rect. 9 6
897 67.47 atmosphere 1005.0 43200 < th dose independent rect. 13 1
925 67.48 humidity 90.0 43200 > th dose independent rect. 5 8
928 67.48 humidity 90.0 43200 < th dose independent rect. 5 9
930 67.48 radiation 1.0 14400 < th dose independent rect. 5 14
932 67.48 humidity 90.0 43200 < th dose independent rect. 5 16
938 67.48 radiation 1.0 14400 < th dose independent rect. 5 22
943 67.48 radiation 1.0 14400 < th dose dependent rect. 16 3
954 67.48 radiation 1.0 14400 < th dose dependent rect. 16 12
956 67.48 humidity 90.0 43200 > th dose dependent rect. 6 17
961 67.49 radiation 1.0 14400 < th dose independent no NA NA
971 67.49 humidity 90.0 43200 > th dose independent rect. 6 17