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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0824500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0249) R2 : 0.00828
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.102 (0.0524) R2dN8 : 0.0107 R2N8 : 0.00828
σ : 0.469
deviance : 101.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.01 0.456 2.94 -0.57 0.111 0.769 -0.368 -7.07 0.0972 11.6 30.7 26 -- --
98.58 0.466 2.89 -0.129 0.117 0.0765 -0.422 -- 0.0951 11.6 30.7 26 -- --
94.53 0.456 2.94 -0.576 0.115 0.785 -- -7.22 0.0953 10.9 30.7 22 -- --
99.3 0.467 2.89 -0.147 0.124 0.0768 -- -- 0.0926 10.6 30.7 26 -- --
95.34 0.457 2.94 -0.585 -- 0.814 -- -7.31 0.096 -- 30.7 22 -- --
98.73 0.466 2.89 -0.123 0.125 -- -0.413 -- 0.0897 11.7 -- -- -- --
99.44 0.467 2.89 -0.14 0.129 -- -- -- 0.0875 11.1 -- -- -- --
100.23 0.468 2.89 -0.151 -- 0.0957 -- -- 0.0934 -- 30.7 22 -- --
99.86 0.468 2.89 -- 0.125 0.0628 -- -- 0.108 10.8 30.7 26 -- --
100.47 0.468 2.9 -0.143 -- -- -- -- 0.0864 -- -- -- -- --
99.96 0.468 2.89 -- 0.13 -- -- -- 0.103 11.1 -- -- -- --
100.83 0.469 2.89 -- -- 0.0837 -- -- 0.109 -- 30.65 19 -- --
101.01 0.469 2.89 -- -- -- -- -- 0.102 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.40 radiation 10.0 90 < th dose dependent rect. 10 2
3 91.82 wind 7.0 10 > th dose dependent rect. 12 3
6 91.88 wind 9.0 90 > th dose independent rect. 13 2
10 91.91 wind 9.0 10 > th dose independent rect. 13 1
40 92.24 radiation 20.0 90 < th dose independent rect. 10 1
48 92.45 precipitation 0.1 1440 > th dose independent rect. 10 3
49 92.45 precipitation 0.1 1440 > th dose dependent rect. 10 3
50 92.51 precipitation 0.1 1440 > th dose independent rect. 12 1
53 92.51 precipitation 0.1 1440 > th dose dependent rect. 12 1
64 92.86 wind 1.0 1440 < th dose independent rect. 17 1
66 92.90 wind 1.0 1440 < th dose dependent rect. 17 1
68 92.92 wind 1.0 1440 > th dose independent rect. 17 1
107 93.80 temperature 30.0 10 > th dose dependent rect. 11 2
118 93.89 temperature 30.0 90 > th dose independent rect. 11 2
119 93.90 radiation 30.0 10 > th dose independent rect. 13 1
186 94.26 atmosphere 1005.0 270 > th dose independent rect. 10 1
187 94.26 atmosphere 1005.0 90 > th dose independent rect. 10 4
309 94.51 radiation 20.0 10 > th dose dependent rect. 13 1
311 94.52 temperature 30.0 10 > th dose dependent sin 7 NA
352 94.68 temperature 30.0 30 > th dose independent sin 6 NA
414 94.88 radiation 30.0 90 < th dose dependent rect. 19 17
440 95.01 atmosphere 1005.0 90 > th dose independent rect. 10 13
451 95.09 radiation 40.0 10 < th dose independent rect. 13 21
481 95.13 radiation 40.0 30 < th dose independent rect. 13 6
498 95.17 wind 3.0 30 > th dose independent rect. 9 5
514 95.18 wind 1.0 30 < th dose independent rect. 17 1
525 95.18 wind 1.0 30 < th dose dependent rect. 17 1
540 95.20 humidity 60.0 270 > th dose independent rect. 9 2
580 95.27 radiation 30.0 10 < th dose independent rect. 19 18
592 95.32 humidity 70.0 90 < th dose independent rect. 17 1
617 95.35 humidity 70.0 30 < th dose independent rect. 17 3
642 95.39 wind 1.0 270 > th dose independent rect. 8 13
666 95.44 radiation 40.0 270 < th dose independent rect. 18 18
675 95.47 radiation 40.0 10 < th dose independent rect. 13 15
678 95.47 humidity 70.0 90 < th dose dependent rect. 17 2
682 95.48 wind 7.0 30 < th dose independent rect. 13 21
713 95.54 humidity 50.0 10 > th dose independent rect. 10 4
720 95.55 atmosphere 1005.0 90 > th dose independent rect. 10 21
742 95.57 temperature 30.0 4320 < th dose independent rect. 12 2
745 95.59 temperature 30.0 4320 > th dose independent rect. 12 1
751 95.59 radiation 1.0 270 > th dose independent rect. 11 22
752 95.60 temperature 30.0 30 < th dose independent sin 6 NA
792 95.63 atmosphere 995.0 90 > th dose dependent rect. 10 13
796 95.64 atmosphere 1010.0 10 < th dose independent rect. 14 20
817 95.67 atmosphere 995.0 30 > th dose dependent rect. 10 4
841 95.69 atmosphere 1005.0 90 > th dose independent rect. 10 15
843 95.69 radiation 10.0 720 < th dose dependent rect. 24 7
850 95.71 wind 3.0 10 < th dose independent rect. 12 1
908 95.77 radiation 40.0 90 < th dose independent rect. 23 11
980 95.82 atmosphere 995.0 30 > th dose dependent rect. 19 19
989 95.84 wind 1.0 270 > th dose independent rect. 9 2
991 95.84 atmosphere 1005.0 90 > th dose independent rect. 19 19