Os01g0823600 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0823600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	13	(0.0622)	R²	:	0.855
β₁	:	-0.959	(0.227)	R²_dD	:	0.00681	R²_D	:	0.00221
β₂	:	3.82	(0.282)	R²_dC	:	0.189	R²_C	:	0.566
β₃	:	-4.99	(0.31)	R²_dE	:	0.268	R²_E	:	0.649
β₄	:	3.96	(0.649)	R²_dD*C	:	0.00787	R²_D*C	:	0.00616
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.616	(0.132)	R²_dN8	:	0.0111	R²_N8	:	0.0038
σ	:	1.15
deviance	:	614.68
__

_____

C
peak time of C	:	8.51
E
wheather	:	radiation
threshold	:	8.281
memory length	:	6
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	sin
peak or start time of G	:	13.2
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
612.39	1.16	13.1	-1.08	3.84	-5.04	4.81	2.13	-0.749	8.47	8.872	10	13.4	--
614.68	1.15	13	-0.959	3.82	-4.99	3.96	--	-0.616	8.51	8.281	6	13.2	--
636.9	1.18	13	-0.944	3.99	-4.9	--	-2.76	-0.711	8.53	8.872	10	13.4	--
645.97	1.18	13	-0.946	3.68	-5.09	--	--	-0.719	8.35	8.213	6	13.1	--
710.65	1.24	13.2	-0.947	--	-7.72	--	-3.14	-0.914	--	44.07	34	11.1	--
957.86	1.45	12.9	-1.02	7.62	--	3.46	--	-0.712	8.28	--	--	--	--
994.84	1.48	12.9	-0.921	7.61	--	--	--	-0.715	8.26	--	--	--	--
742.83	1.27	13.2	-1.04	--	-7.81	--	--	-1	--	42.88	33	11.2	--
669.52	1.21	13	--	3.71	-5.05	--	--	-0.614	8.38	8.28	6	13.1	--
4202.05	3.03	13.1	-0.868	--	--	--	--	-0.63	--	--	--	--	--
1017.2	1.49	12.9	--	7.61	--	--	--	-0.612	8.27	--	--	--	--
770.95	1.29	13.1	--	--	-7.66	--	--	-0.654	--	17.47	10	11.6	--
4221.93	3.03	13.1	--	--	--	--	--	-0.534	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	614.42	radiation	10.0	10	< th	dose dependent	sin	19	NA
11	651.40	radiation	1.0	30	< th	dose independent	sin	21	NA
18	658.51	radiation	1.0	30	> th	dose independent	sin	21	NA
41	679.19	radiation	10.0	90	< th	dose dependent	rect.	7	14
42	679.27	temperature	10.0	270	> th	dose dependent	rect.	16	16
43	682.38	temperature	20.0	270	> th	dose independent	rect.	15	6
46	684.00	radiation	10.0	90	< th	dose dependent	rect.	9	12
48	684.43	radiation	10.0	90	< th	dose dependent	rect.	11	10
56	686.51	radiation	10.0	10	< th	dose dependent	rect.	7	14
77	691.55	radiation	1.0	90	< th	dose independent	rect.	7	12
100	694.89	radiation	1.0	270	> th	dose independent	rect.	9	6
114	696.97	radiation	1.0	30	< th	dose independent	rect.	6	15
116	697.03	radiation	1.0	90	> th	dose independent	rect.	11	6
135	697.59	radiation	1.0	90	< th	dose independent	rect.	11	8
150	699.72	temperature	30.0	90	< th	dose dependent	rect.	21	8
161	701.16	temperature	20.0	90	> th	dose independent	rect.	17	18
165	701.74	atmosphere	1015.0	270	< th	dose independent	rect.	15	18
226	707.27	temperature	20.0	90	> th	dose independent	rect.	17	6
237	709.01	radiation	1.0	270	> th	dose independent	rect.	8	8
252	710.35	temperature	20.0	270	> th	dose independent	rect.	16	3
283	712.69	radiation	40.0	270	< th	dose dependent	rect.	15	4
284	712.90	radiation	1.0	30	< th	dose independent	rect.	15	6
297	713.54	humidity	80.0	90	< th	dose independent	rect.	11	6
347	716.58	precipitation	0.1	270	< th	dose independent	rect.	9	6
349	716.58	precipitation	0.1	270	< th	dose dependent	rect.	9	6
350	716.63	atmosphere	1015.0	90	< th	dose independent	rect.	17	18
399	718.72	temperature	10.0	270	> th	dose dependent	rect.	15	7
405	719.18	wind	9.0	270	< th	dose independent	rect.	15	18
408	719.75	radiation	1.0	30	> th	dose dependent	sin	16	NA
412	719.96	temperature	10.0	270	> th	dose independent	rect.	9	6
413	719.96	atmosphere	1015.0	270	< th	dose independent	rect.	9	6
414	719.96	temperature	10.0	270	> th	dose independent	rect.	15	18
418	720.21	radiation	40.0	270	< th	dose independent	rect.	15	18
424	720.77	radiation	30.0	270	< th	dose independent	rect.	15	4
430	721.36	precipitation	0.1	270	< th	dose independent	rect.	19	21
431	721.36	precipitation	0.1	270	< th	dose dependent	rect.	19	21
438	721.71	humidity	80.0	270	< th	dose independent	rect.	11	3
457	723.37	wind	9.0	270	< th	dose independent	rect.	9	6
467	724.12	atmosphere	1015.0	270	< th	dose independent	rect.	15	6
505	726.28	precipitation	0.1	270	< th	dose independent	rect.	19	10
506	726.28	precipitation	0.1	270	< th	dose dependent	rect.	19	10
520	727.58	wind	9.0	270	< th	dose independent	rect.	15	5
523	727.70	precipitation	0.1	270	< th	dose independent	rect.	20	19
524	727.70	precipitation	0.1	270	< th	dose dependent	rect.	20	19
539	728.13	wind	9.0	270	< th	dose independent	rect.	16	3
542	728.25	wind	9.0	270	< th	dose independent	rect.	5	14
545	728.52	temperature	10.0	270	> th	dose independent	rect.	16	3
547	728.52	atmosphere	1010.0	270	< th	dose independent	rect.	16	3
550	728.52	temperature	10.0	270	> th	dose independent	rect.	19	21
551	728.52	radiation	1.0	270	< th	dose dependent	rect.	19	10
557	728.85	atmosphere	995.0	270	> th	dose independent	rect.	9	6
560	729.02	temperature	10.0	270	> th	dose independent	rect.	15	5
562	729.02	temperature	10.0	270	> th	dose independent	rect.	20	19
572	729.16	atmosphere	995.0	270	> th	dose independent	rect.	15	18
590	729.30	radiation	1.0	270	< th	dose independent	rect.	19	10
597	729.44	temperature	10.0	270	> th	dose independent	rect.	19	10
598	729.44	temperature	30.0	270	< th	dose independent	rect.	19	10
599	729.44	humidity	50.0	270	> th	dose independent	rect.	19	10
600	729.44	atmosphere	995.0	270	> th	dose independent	rect.	19	10
604	729.44	temperature	10.0	270	> th	dose independent	rect.	5	14
605	729.44	atmosphere	1015.0	270	< th	dose independent	rect.	5	14
619	729.79	wind	9.0	270	< th	dose independent	rect.	19	10
630	730.27	temperature	20.0	10	> th	dose independent	rect.	18	16
651	731.04	wind	1.0	270	> th	dose independent	rect.	15	5
660	731.74	atmosphere	995.0	270	> th	dose independent	rect.	15	5
681	732.55	wind	9.0	270	< th	dose independent	rect.	20	19
684	732.99	temperature	15.0	90	> th	dose dependent	rect.	17	8
720	733.74	wind	1.0	270	> th	dose independent	rect.	16	3
737	734.24	temperature	10.0	90	> th	dose dependent	rect.	17	6
744	734.50	temperature	10.0	270	> th	dose dependent	rect.	16	4
745	734.56	precipitation	0.1	90	< th	dose independent	rect.	11	6
746	734.56	precipitation	0.1	90	< th	dose dependent	rect.	11	6
748	734.95	atmosphere	995.0	270	> th	dose independent	rect.	16	3
752	735.00	wind	9.0	270	< th	dose independent	rect.	19	21
754	735.18	humidity	50.0	90	> th	dose independent	rect.	17	18
768	735.77	humidity	50.0	90	> th	dose independent	rect.	16	5
781	736.16	atmosphere	995.0	270	> th	dose independent	rect.	20	19
813	737.01	radiation	1.0	90	< th	dose independent	rect.	17	2
829	737.56	atmosphere	995.0	90	> th	dose independent	rect.	17	18
844	738.20	temperature	10.0	90	> th	dose dependent	rect.	11	6
862	738.57	wind	1.0	270	> th	dose independent	rect.	9	6
940	740.40	radiation	1.0	90	< th	dose dependent	rect.	17	2
973	741.64	temperature	10.0	270	> th	dose dependent	rect.	9	6
976	741.74	wind	9.0	90	< th	dose independent	rect.	17	18
981	741.87	temperature	10.0	90	> th	dose independent	rect.	11	6
982	741.87	atmosphere	1015.0	90	< th	dose independent	rect.	11	6
983	741.87	temperature	10.0	90	> th	dose independent	rect.	17	18