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Os01g0823200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.6 (0.0273) R2 : 0.479
β1 : -1.45 (0.105) R2dD : 0.257 R2D : 0.145
β2 : 1 (0.0702) R2dC : 0.235 R2C : 0.222
β3 : -1.98 (0.222) R2dE : 0.106 R2E : 0.00167
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.102 (0.059) R2dN8 : 0.00511 R2N8 : -0.015
σ : 0.507
deviance : 118.48
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_____
C
peak time of C : 7.09
E
wheather : temperature
threshold : 19.6
memory length : 151
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.95 0.495 8.63 -1.47 0.988 -0.691 -1.5 2.8 -0.129 7.33 20.8 139 -- --
113.93 0.497 8.62 -1.42 1.06 -2.01 -1.22 -- -0.175 7.26 19.62 150 -- --
116.73 0.507 8.63 -1.51 0.976 -0.922 -- 2.39 -0.134 7.01 20.8 139 -- --
118.48 0.507 8.6 -1.45 1 -1.98 -- -- -0.102 7.09 19.6 151 -- --
166.75 0.605 8.65 -1.5 -- -0.886 -- 2.61 -0.118 -- 20.77 36 -- --
132.83 0.54 8.58 -1.11 0.978 -- -1.6 -- -0.00303 7.7 -- -- -- --
139.62 0.553 8.58 -1.15 0.988 -- -- -- -0.003 7.35 -- -- -- --
170.6 0.608 8.62 -1.4 -- -1.97 -- -- -0.0794 -- 19.47 37 -- --
168.44 0.604 8.55 -- 0.981 -1.17 -- -- 0.106 7.38 18.03 136 -- --
191.57 0.647 8.6 -1.14 -- -- -- -- 0.0134 -- -- -- -- --
174.71 0.618 8.55 -- 0.978 -- -- -- 0.126 7.43 -- -- -- --
218.71 0.689 8.58 -- -- -1.17 -- -- 0.107 -- 19.14 31 -- --
225.7 0.701 8.57 -- -- -- -- -- 0.14 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 107.58 temperature 15.0 720 > th dose independent rect. 20 16
2 108.13 humidity 80.0 43200 < th dose dependent rect. 4 2
5 108.49 temperature 15.0 720 > th dose independent rect. 22 14
6 108.91 temperature 15.0 720 > th dose independent rect. 24 18
10 109.09 temperature 15.0 270 > th dose independent rect. 7 14
13 109.24 atmosphere 1015.0 4320 < th dose independent rect. 16 3
14 109.29 temperature 15.0 4320 > th dose independent rect. 16 3
15 109.46 atmosphere 1015.0 720 < th dose independent rect. 24 8
18 109.50 temperature 15.0 720 > th dose independent rect. 24 12
19 109.50 temperature 15.0 720 > th dose independent rect. 24 15
20 109.52 temperature 15.0 4320 > th dose independent rect. 14 5
21 109.56 temperature 15.0 720 > th dose independent sin 9 NA
26 109.76 temperature 10.0 43200 > th dose independent rect. 13 7
28 109.85 temperature 20.0 90 > th dose independent rect. 6 8
29 109.86 temperature 15.0 720 > th dose independent sin 2 NA
37 110.01 temperature 20.0 30 > th dose independent rect. 20 16
38 110.01 radiation 1.0 10 > th dose dependent sin 6 NA
40 110.04 radiation 10.0 10 > th dose dependent rect. 13 23
53 110.30 temperature 15.0 720 > th dose independent rect. 19 22
54 110.33 temperature 15.0 4320 > th dose independent rect. 11 8
55 110.34 temperature 15.0 720 > th dose independent rect. 24 8
57 110.38 temperature 15.0 720 > th dose independent rect. 24 21
63 110.42 radiation 20.0 4320 < th dose independent rect. 19 11
65 110.45 temperature 15.0 1440 > th dose independent rect. 6 13
68 110.49 temperature 15.0 720 > th dose independent rect. 3 9
73 110.55 temperature 15.0 720 > th dose independent rect. 22 21
79 110.59 humidity 50.0 43200 < th dose independent rect. 17 14
83 110.63 temperature 10.0 43200 > th dose independent rect. 9 11
89 110.68 humidity 50.0 43200 < th dose dependent rect. 16 17
93 110.71 temperature 10.0 43200 > th dose independent rect. 11 10
98 110.76 temperature 20.0 90 > th dose independent rect. 6 19
99 110.76 temperature 20.0 90 < th dose dependent rect. 23 23
104 110.82 temperature 20.0 90 < th dose dependent sin 6 NA
106 110.83 radiation 10.0 10 > th dose dependent rect. 15 21
110 110.90 humidity 50.0 43200 > th dose independent rect. 17 14
114 110.94 radiation 10.0 10 > th dose dependent rect. 7 5
115 110.95 temperature 20.0 270 > th dose independent rect. 6 17
131 110.96 temperature 20.0 90 < th dose dependent rect. 23 20
135 111.00 atmosphere 1015.0 720 < th dose independent rect. 24 17
167 111.23 temperature 20.0 90 < th dose dependent rect. 23 15
180 111.25 temperature 20.0 90 < th dose dependent rect. 23 13
189 111.26 precipitation 0.1 1440 < th dose independent rect. 7 6
190 111.26 precipitation 0.1 1440 < th dose dependent rect. 7 6
193 111.29 temperature 15.0 90 > th dose independent sin 5 NA
206 111.31 temperature 15.0 90 > th dose independent sin 21 NA
207 111.31 temperature 15.0 270 > th dose independent sin 23 NA
209 111.31 radiation 40.0 30 < th dose independent rect. 21 23
217 111.36 temperature 20.0 30 > th dose independent rect. 20 18
220 111.38 atmosphere 1015.0 720 < th dose independent rect. 24 15
232 111.45 temperature 15.0 720 > th dose independent rect. 9 8
243 111.48 temperature 15.0 720 > th dose independent rect. 22 9
244 111.48 humidity 90.0 30 < th dose independent rect. 9 14
265 111.61 temperature 20.0 90 < th dose dependent rect. 19 23
273 111.65 temperature 20.0 90 < th dose dependent rect. 16 22
282 111.68 humidity 80.0 43200 > th dose independent rect. 1 17
284 111.68 temperature 20.0 90 < th dose dependent rect. 1 23
286 111.69 temperature 20.0 90 < th dose dependent no NA NA
288 111.69 humidity 80.0 43200 < th dose dependent rect. 20 11
295 111.71 temperature 15.0 4320 > th dose independent rect. 9 10
312 111.75 temperature 20.0 90 < th dose dependent rect. 8 23
316 111.77 radiation 40.0 10 < th dose dependent rect. 21 23
322 111.78 temperature 20.0 90 < th dose dependent rect. 3 23
326 111.82 humidity 50.0 30 > th dose dependent rect. 21 23
327 111.83 humidity 80.0 43200 < th dose independent rect. 1 16
341 111.87 temperature 15.0 720 > th dose independent rect. 9 23
353 111.91 temperature 15.0 270 > th dose independent sin 18 NA
357 111.91 temperature 15.0 14400 < th dose dependent rect. 11 4
359 111.92 humidity 80.0 43200 > th dose independent rect. 2 15
366 111.93 temperature 20.0 90 < th dose dependent rect. 19 19
379 111.96 temperature 15.0 14400 < th dose dependent rect. 10 8
436 112.13 temperature 20.0 30 > th dose independent rect. 18 18
441 112.14 temperature 15.0 14400 < th dose dependent rect. 20 2
454 112.17 temperature 15.0 14400 < th dose dependent rect. 12 11
464 112.20 temperature 20.0 30 > th dose independent rect. 18 20
481 112.25 temperature 15.0 14400 < th dose dependent rect. 9 13
519 112.37 humidity 70.0 43200 > th dose dependent rect. 24 17
526 112.39 humidity 50.0 43200 > th dose independent rect. 17 5
574 112.51 radiation 40.0 10 < th dose dependent sin 6 NA
577 112.52 precipitation 0.1 1440 < th dose independent rect. 5 8
581 112.52 humidity 50.0 43200 < th dose dependent rect. 16 6
584 112.52 precipitation 0.1 1440 < th dose dependent rect. 5 8
588 112.52 temperature 15.0 14400 < th dose dependent rect. 7 16
590 112.53 humidity 50.0 43200 < th dose independent rect. 17 5
604 112.54 radiation 40.0 30 < th dose independent rect. 19 23
614 112.55 humidity 50.0 43200 < th dose independent rect. 16 18
615 112.55 temperature 15.0 720 > th dose independent rect. 7 23
626 112.56 temperature 20.0 10 < th dose dependent rect. 1 23
636 112.58 temperature 15.0 14400 < th dose dependent rect. 5 17
642 112.59 temperature 15.0 90 > th dose independent rect. 9 14
649 112.60 humidity 50.0 43200 > th dose independent rect. 16 18
655 112.61 temperature 15.0 720 > th dose independent rect. 13 23
656 112.61 temperature 15.0 14400 < th dose dependent sin 22 NA
663 112.62 radiation 20.0 720 > th dose dependent rect. 11 1
675 112.64 atmosphere 1015.0 720 < th dose independent rect. 24 10
686 112.65 temperature 15.0 14400 < th dose independent rect. 7 14
695 112.66 humidity 80.0 43200 < th dose dependent rect. 23 1
728 112.70 humidity 80.0 43200 > th dose independent rect. 3 13
776 112.74 radiation 10.0 10 > th dose dependent rect. 11 23
805 112.78 precipitation 0.1 1440 > th dose dependent rect. 5 6
842 112.81 humidity 90.0 720 < th dose independent rect. 9 6
851 112.82 humidity 80.0 43200 > th dose dependent rect. 13 18
854 112.83 temperature 15.0 14400 < th dose independent sin 20 NA
871 112.86 radiation 1.0 10 > th dose dependent rect. 9 23
872 112.87 temperature 15.0 14400 < th dose independent rect. 11 11
905 112.89 radiation 40.0 10 < th dose dependent rect. 19 23
933 112.92 radiation 30.0 10 < th dose independent sin 6 NA
956 112.95 temperature 15.0 720 > th dose independent rect. 9 21
974 112.96 temperature 15.0 14400 < th dose independent rect. 15 8
985 112.97 precipitation 0.1 1440 > th dose independent rect. 5 6