Os01g0822200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0822200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.48 | 0.251 | 9.9 | 1.53 | 1 | -0.48 | 0.213 | -3 | 0.427 | 9.17 | 1.087 | 4540 | -- | -- |
| 31.05 | 0.26 | 10 | 1.08 | 1.13 | -0.353 | 0.66 | -- | 0.204 | 9.41 | 15.03 | 20881 | -- | -- |
| 28.59 | 0.249 | 9.9 | 1.55 | 0.994 | -0.557 | -- | -3.24 | 0.418 | 9.13 | 0.6702 | 4546 | -- | -- |
| 32.73 | 0.266 | 9.99 | 1.1 | 1.09 | -0.335 | -- | -- | 0.23 | 9.52 | 16.58 | 20925 | -- | -- |
| 57.96 | 0.357 | 9.98 | 1.06 | -- | -0.618 | -- | -0.522 | 0.356 | -- | 0.6702 | 4546 | -- | -- |
| 35.13 | 0.278 | 9.96 | 1.05 | 1.05 | -- | 0.719 | -- | 0.355 | 9.65 | -- | -- | -- | -- |
| 37.05 | 0.285 | 9.96 | 1.08 | 1.05 | -- | -- | -- | 0.356 | 9.58 | -- | -- | -- | -- |
| 52.95 | 0.34 | 9.99 | 1.09 | -- | -0.696 | -- | -- | 0.339 | -- | 6.252 | 4537 | -- | -- |
| 50.68 | 0.332 | 10.1 | -- | 1.08 | -0.75 | -- | -- | 0.0953 | 9.26 | 2.081 | 29320 | -- | -- |
| 101.97 | 0.472 | 9.98 | 1.07 | -- | -- | -- | -- | 0.358 | -- | -- | -- | -- | -- |
| 67.73 | 0.385 | 9.98 | -- | 1.05 | -- | -- | -- | 0.235 | 9.5 | -- | -- | -- | -- |
| 84.16 | 0.429 | 10 | -- | -- | -0.689 | -- | -- | 0.218 | -- | 6.252 | 4537 | -- | -- |
| 132.22 | 0.537 | 10 | -- | -- | -- | -- | -- | 0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.77 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 12 | 27.90 | wind | 1.0 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 13 | 27.93 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 14 | 27.94 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 15 | 27.96 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 17 | 27.96 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 25 | 28.05 | wind | 1.0 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 26 | 28.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 28 | 28.08 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 29 | 28.09 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 31 | 28.09 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 38 | 28.16 | wind | 1.0 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 39 | 28.17 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 40 | 28.17 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 60 | 28.33 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 70 | 28.36 | wind | 1.0 | 43200 | > th | dose independent | rect. | 18 | 14 |
| 74 | 28.39 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 75 | 28.39 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 76 | 28.39 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 13 |
| 83 | 28.41 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 133 | 28.47 | wind | 1.0 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 149 | 28.48 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 208 | 28.51 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 24 | 3 |
| 214 | 28.51 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 268 | 28.52 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 20 | 16 |
| 303 | 28.54 | temperature | 15.0 | 43200 | > th | dose dependent | sin | 8 | NA |
| 307 | 28.54 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 354 | 28.55 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 24 | 3 |
| 361 | 28.55 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 498 | 28.57 | temperature | 30.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 530 | 28.57 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 11 |
| 531 | 28.57 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 1 | 12 |
| 585 | 28.58 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 608 | 28.58 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 11 | 7 |
| 669 | 28.59 | wind | 1.0 | 43200 | < th | dose independent | rect. | 9 | 15 |
| 751 | 28.60 | wind | 1.0 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 819 | 28.60 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 14 |
| 833 | 28.60 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 10 | 18 |
| 880 | 28.61 | temperature | 15.0 | 43200 | > th | dose dependent | no | NA | NA |
| 894 | 28.61 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 24 | 3 |
| 955 | 28.61 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 11 | 16 |
| 997 | 28.61 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 5 | 22 |