Os01g0821900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os01g0821900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.62 | 0.494 | 6.4 | 2.77 | 1.07 | -0.933 | 0.736 | -4.02 | 0.613 | 0.942 | 25.28 | 4815 | -- | -- |
| 124.35 | 0.519 | 6.55 | 1.98 | 1.08 | -0.492 | 0.75 | -- | 0.42 | 0.937 | 38.99 | 6156 | -- | -- |
| 111.36 | 0.491 | 6.4 | 2.92 | 1.03 | -0.601 | -- | -4.11 | 0.682 | 1.04 | 35.15 | 3643 | -- | -- |
| 122.86 | 0.516 | 6.61 | 1.47 | 1.09 | -0.789 | -- | -- | 0.243 | 0.953 | 35.07 | 32892 | -- | -- |
| 173.9 | 0.614 | 6.41 | 2.93 | -- | -0.836 | -- | -4.06 | 0.647 | -- | 57.29 | 2476 | -- | -- |
| 128.49 | 0.531 | 6.52 | 2.23 | 1.09 | -- | 0.779 | -- | 0.534 | 0.921 | -- | -- | -- | -- |
| 131.03 | 0.536 | 6.52 | 2.2 | 1.09 | -- | -- | -- | 0.53 | 0.978 | -- | -- | -- | -- |
| 188.22 | 0.642 | 6.47 | 2.43 | -- | 1.06 | -- | -- | 0.692 | -- | 35.07 | 32892 | -- | -- |
| 131.36 | 0.534 | 6.7 | -- | 1.05 | -1.82 | -- | -- | -0.257 | 0.979 | 79.67 | 47520 | -- | -- |
| 204.5 | 0.668 | 6.51 | 2.24 | -- | -- | -- | -- | 0.551 | -- | -- | -- | -- | -- |
| 258.56 | 0.752 | 6.58 | -- | 1.12 | -- | -- | -- | 0.285 | 1.06 | -- | -- | -- | -- |
| 199.81 | 0.658 | 6.69 | -- | -- | -1.88 | -- | -- | -0.262 | -- | 87.11 | 47520 | -- | -- |
| 336.89 | 0.857 | 6.56 | -- | -- | -- | -- | -- | 0.302 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.96 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 2 | 106.41 | wind | 1 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 6 | 106.98 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 9 | 107.03 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 11 | 107.05 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 15 | 107.14 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 18 | 107.21 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 19 | 107.26 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 11 |
| 20 | 107.27 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 21 | 107.27 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 15 |
| 23 | 107.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 25 | 107.30 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 26 | 107.31 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 30 | 107.31 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 32 | 107.32 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 34 | 107.32 | wind | 1 | 43200 | < th | dose dependent | rect. | 15 | 7 |
| 36 | 107.33 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 15 |
| 47 | 107.50 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 50 | 107.53 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 11 |
| 51 | 107.54 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 62 | 107.75 | temperature | 20 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 68 | 107.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 12 |
| 69 | 107.80 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 71 | 107.81 | temperature | 25 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 74 | 107.83 | radiation | 1 | 43200 | < th | dose dependent | rect. | 8 | 10 |
| 75 | 107.84 | temperature | 20 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 76 | 107.87 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 84 | 107.90 | temperature | 25 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 89 | 107.93 | temperature | 25 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 97 | 107.95 | wind | 1 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 98 | 107.95 | temperature | 20 | 43200 | < th | dose independent | rect. | 3 | 9 |
| 99 | 107.95 | temperature | 20 | 43200 | > th | dose independent | rect. | 2 | 10 |
| 102 | 107.95 | temperature | 20 | 14400 | < th | dose dependent | rect. | 5 | 6 |
| 103 | 107.96 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 12 |
| 104 | 107.96 | temperature | 15 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 205 | 108.10 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 236 | 108.13 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 260 | 108.16 | temperature | 20 | 43200 | > th | dose independent | sin | 4 | NA |
| 261 | 108.16 | temperature | 20 | 43200 | < th | dose independent | sin | 4 | NA |
| 263 | 108.16 | radiation | 1 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 300 | 108.18 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 15 |
| 306 | 108.19 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 17 |
| 370 | 108.25 | wind | 1 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 402 | 108.28 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 17 |
| 405 | 108.28 | temperature | 15 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 575 | 108.42 | temperature | 25 | 43200 | < th | dose dependent | sin | 11 | NA |
| 599 | 108.44 | wind | 1 | 43200 | > th | dose independent | sin | 19 | NA |
| 624 | 108.46 | temperature | 20 | 14400 | < th | dose dependent | sin | 2 | NA |
| 631 | 108.47 | wind | 1 | 43200 | < th | dose independent | sin | 19 | NA |
| 674 | 108.50 | temperature | 25 | 43200 | < th | dose dependent | rect. | 20 | 16 |
| 744 | 108.54 | radiation | 1 | 43200 | < th | dose dependent | sin | 1 | NA |