Os01g0821300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : DNA-binding WRKY domain containing protein.
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Os01g0821300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : DNA-binding WRKY domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122.17 | 0.519 | 3.47 | 0.0162 | 0.0123 | 2.35 | 0.368 | -2.15 | 0.00808 | 14.5 | 10.28 | 429 | -- | -- |
| 122.32 | 0.515 | 3.48 | 0.0331 | 0.0178 | 2.77 | 0.371 | -- | 0.00728 | 14.5 | 10.28 | 432 | -- | -- |
| 122.45 | 0.515 | 3.47 | 0.0259 | 0.0693 | 2.35 | -- | -1.97 | 0.0174 | 18.8 | 10.28 | 457 | -- | -- |
| 122.59 | 0.516 | 3.48 | 0.0389 | 0.0679 | 2.71 | -- | -- | 0.00857 | 19.1 | 10.28 | 446 | -- | -- |
| 122.66 | 0.516 | 3.47 | 0.0221 | -- | 2.34 | -- | -2.15 | 0.00878 | -- | 10.29 | 463 | -- | -- |
| 142.51 | 0.56 | 3.5 | -0.0985 | 0.152 | -- | -0.397 | -- | -0.0472 | 19.7 | -- | -- | -- | -- |
| 142.92 | 0.56 | 3.5 | -0.0874 | 0.156 | -- | -- | -- | -0.0472 | 19.1 | -- | -- | -- | -- |
| 122.83 | 0.516 | 3.48 | 0.0391 | -- | 2.75 | -- | -- | 0.00796 | -- | 10.29 | 449 | -- | -- |
| 122.63 | 0.516 | 3.48 | -- | 0.0679 | 2.69 | -- | -- | 0.00382 | 19.1 | 10.29 | 446 | -- | -- |
| 144.21 | 0.561 | 3.49 | -0.0904 | -- | -- | -- | -- | -0.0499 | -- | -- | -- | -- | -- |
| 143.13 | 0.56 | 3.49 | -- | 0.157 | -- | -- | -- | -0.0374 | 19.1 | -- | -- | -- | -- |
| 122.87 | 0.516 | 3.48 | -- | -- | 2.74 | -- | -- | 0.00324 | -- | 10.29 | 443 | -- | -- |
| 144.42 | 0.561 | 3.49 | -- | -- | -- | -- | -- | -0.0399 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 120.99 | wind | 7 | 90 | > th | dose dependent | sin | 14 | NA |
| 4 | 121.42 | wind | 9 | 90 | < th | dose independent | sin | 12 | NA |
| 7 | 121.57 | wind | 9 | 90 | > th | dose independent | sin | 12 | NA |
| 9 | 121.68 | wind | 7 | 90 | > th | dose dependent | rect. | 15 | 11 |
| 11 | 121.76 | wind | 9 | 10 | < th | dose independent | sin | 12 | NA |
| 15 | 121.96 | wind | 7 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 22 | 122.03 | wind | 7 | 90 | > th | dose dependent | rect. | 15 | 9 |
| 49 | 122.82 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 20 |
| 63 | 122.86 | wind | 9 | 90 | > th | dose independent | rect. | 14 | 12 |
| 75 | 122.95 | wind | 9 | 270 | > th | dose independent | rect. | 13 | 10 |
| 224 | 123.78 | wind | 9 | 30 | > th | dose independent | rect. | 17 | 9 |
| 263 | 123.87 | wind | 9 | 720 | > th | dose dependent | rect. | 14 | 2 |
| 343 | 124.27 | wind | 9 | 30 | > th | dose independent | rect. | 17 | 5 |
| 395 | 124.60 | wind | 9 | 720 | > th | dose dependent | rect. | 11 | 5 |
| 397 | 124.61 | wind | 7 | 90 | > th | dose dependent | rect. | 17 | 9 |
| 431 | 125.01 | wind | 9 | 720 | > th | dose independent | rect. | 14 | 2 |
| 437 | 125.02 | wind | 7 | 90 | > th | dose dependent | rect. | 17 | 7 |
| 463 | 125.23 | wind | 9 | 720 | > th | dose independent | rect. | 11 | 5 |
| 791 | 126.11 | wind | 9 | 720 | > th | dose dependent | sin | 0 | NA |
| 835 | 126.30 | wind | 9 | 720 | < th | dose independent | rect. | 3 | 16 |
| 988 | 126.68 | wind | 9 | 720 | < th | dose independent | sin | 2 | NA |