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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0820300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.44 (0.0506) R2 : 0.0279
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.385 (0.106) R2dN8 : 0.0361 R2N8 : 0.0279
σ : 0.952
deviance : 416.28
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
388.33 0.926 3.44 -0.0627 0.375 2.99 0.168 4.45 -0.357 10.7 9.072 15 -- --
388.67 0.918 3.42 -0.0639 0.37 2.98 0.363 -- -0.344 10.7 9 18 -- --
387.04 0.916 3.44 -0.0784 0.37 3.42 -- 3.67 -0.363 11.1 9.043 18 -- --
388.72 0.918 3.42 -0.0799 0.379 2.55 -- -- -0.348 10.7 9.1 18 -- --
395.53 0.926 3.44 -0.0985 -- 3.79 -- 4.43 -0.353 -- 9.1 18 -- --
403.06 0.941 3.43 -0.242 0.429 -- 0.0473 -- -0.409 11.4 -- -- -- --
403.07 0.94 3.43 -0.239 0.429 -- -- -- -0.409 11.5 -- -- -- --
397.48 0.929 3.43 -0.0854 -- 2.74 -- -- -0.352 -- 9.026 18 -- --
388.9 0.918 3.42 -- 0.379 2.6 -- -- -0.343 10.9 9.098 18 -- --
414.62 0.951 3.44 -0.251 -- -- -- -- -0.413 -- -- -- -- --
404.58 0.941 3.43 -- 0.432 -- -- -- -0.382 11.5 -- -- -- --
397.67 0.929 3.43 -- -- 2.8 -- -- -0.342 -- 9.088 18 -- --
416.28 0.952 3.44 -- -- -- -- -- -0.385 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 377.67 wind 1.0 720 > th dose dependent rect. 2 1
2 378.56 temperature 15.0 90 > th dose independent rect. 12 23
3 378.66 temperature 15.0 720 > th dose independent rect. 4 20
5 379.04 wind 9.0 30 > th dose independent rect. 10 2
25 379.42 wind 3.0 720 > th dose independent rect. 2 1
26 379.58 temperature 15.0 30 > th dose independent rect. 13 20
27 379.59 wind 9.0 10 < th dose independent sin 7 NA
29 379.71 temperature 15.0 270 > th dose independent rect. 10 22
39 380.12 wind 9.0 10 > th dose dependent rect. 10 2
65 380.15 wind 9.0 10 > th dose dependent sin 7 NA
67 380.42 wind 3.0 270 > th dose independent rect. 1 5
70 380.56 temperature 15.0 720 > th dose independent rect. 11 17
97 380.60 wind 9.0 10 > th dose independent sin 7 NA
100 380.77 temperature 15.0 720 > th dose independent rect. 16 7
101 380.88 temperature 15.0 90 > th dose independent rect. 13 13
103 380.94 wind 1.0 30 > th dose dependent rect. 9 4
110 381.06 temperature 15.0 720 > th dose independent rect. 13 2
118 381.45 temperature 15.0 720 > th dose independent rect. 4 12
119 381.55 temperature 15.0 270 > th dose independent rect. 12 11
120 381.55 temperature 15.0 270 > th dose independent rect. 21 11
131 381.93 wind 3.0 270 > th dose dependent rect. 1 6
138 382.09 temperature 30.0 30 < th dose independent rect. 9 4
141 382.12 temperature 15.0 10 > th dose independent rect. 13 13
146 382.24 atmosphere 1015.0 30 < th dose dependent rect. 13 20
151 382.30 wind 1.0 90 > th dose dependent rect. 2 11
159 382.55 temperature 15.0 720 > th dose independent rect. 4 15
165 382.70 temperature 15.0 720 > th dose independent rect. 9 19
171 382.75 temperature 15.0 720 > th dose independent rect. 7 9
236 383.13 temperature 30.0 30 < th dose independent rect. 11 2
238 383.15 atmosphere 995.0 14400 > th dose independent rect. 12 2
240 383.17 atmosphere 1010.0 90 < th dose independent rect. 13 20
246 383.25 atmosphere 1010.0 30 < th dose independent rect. 13 22
247 383.27 atmosphere 995.0 4320 > th dose independent rect. 10 4
250 383.31 temperature 15.0 720 > th dose independent rect. 19 6
272 383.48 wind 9.0 10 > th dose independent rect. 18 18
291 383.60 atmosphere 995.0 30 > th dose dependent rect. 11 17
336 383.97 atmosphere 1015.0 90 < th dose dependent rect. 13 13
337 383.98 wind 1.0 90 > th dose independent rect. 2 11
338 383.98 temperature 15.0 720 > th dose independent rect. 16 12
342 384.03 temperature 30.0 270 < th dose independent rect. 9 1
363 384.18 humidity 50.0 270 > th dose dependent rect. 8 2
385 384.26 wind 1.0 30 > th dose dependent rect. 11 2
398 384.35 humidity 80.0 270 > th dose independent rect. 8 1
420 384.56 wind 7.0 270 < th dose independent rect. 4 12
442 384.70 wind 3.0 4320 < th dose dependent rect. 2 1
474 384.91 wind 9.0 90 < th dose dependent rect. 4 12
502 385.07 wind 1.0 10 > th dose independent rect. 9 4
507 385.08 temperature 15.0 720 > th dose independent rect. 21 19
509 385.08 atmosphere 995.0 90 > th dose dependent rect. 9 19
511 385.09 temperature 10.0 10 > th dose dependent rect. 13 22
512 385.10 atmosphere 1015.0 1440 < th dose independent rect. 3 2
555 385.37 humidity 50.0 30 > th dose independent rect. 11 2
557 385.37 humidity 50.0 90 > th dose independent rect. 9 4
578 385.42 temperature 15.0 720 > th dose independent rect. 10 15
587 385.50 atmosphere 1010.0 90 < th dose independent rect. 13 13
589 385.52 temperature 30.0 90 < th dose independent rect. 2 11
600 385.58 wind 9.0 10 < th dose independent rect. 13 22
603 385.59 temperature 30.0 720 < th dose dependent rect. 1 2
618 385.66 wind 9.0 90 < th dose independent rect. 12 23
621 385.67 temperature 25.0 10 < th dose dependent rect. 2 4
628 385.72 radiation 1.0 30 > th dose independent rect. 11 2
630 385.73 temperature 15.0 270 > th dose independent rect. 22 23
641 385.75 temperature 10.0 1440 > th dose independent rect. 14 22
644 385.75 temperature 10.0 10 > th dose dependent rect. 13 20
678 385.79 wind 1.0 10 > th dose independent rect. 11 2
680 385.79 temperature 15.0 720 > th dose independent rect. 16 15
687 385.81 temperature 15.0 720 > th dose independent rect. 16 5
688 385.81 atmosphere 1010.0 10 < th dose independent rect. 13 13
694 385.83 temperature 10.0 30 > th dose independent rect. 11 2
696 385.83 atmosphere 995.0 30 > th dose independent rect. 11 2
697 385.83 atmosphere 1015.0 30 < th dose independent rect. 11 2
698 385.83 precipitation 0.1 30 < th dose independent rect. 11 2
701 385.83 precipitation 0.1 30 < th dose dependent rect. 11 2
706 385.84 precipitation 0.1 30 < th dose independent rect. 13 22
710 385.84 precipitation 0.1 30 < th dose dependent rect. 13 22
712 385.86 temperature 15.0 720 > th dose independent rect. 23 17
717 385.89 wind 9.0 10 < th dose independent rect. 13 20
724 385.91 wind 9.0 720 < th dose independent rect. 16 12
752 385.92 wind 1.0 90 > th dose independent rect. 9 21
786 386.03 radiation 1.0 30 > th dose independent rect. 9 4
790 386.04 temperature 20.0 10 < th dose independent rect. 2 4
800 386.06 precipitation 0.1 10 < th dose independent rect. 13 20
801 386.06 precipitation 0.1 10 < th dose dependent rect. 13 20
806 386.08 atmosphere 1000.0 30 > th dose independent rect. 9 4
811 386.09 temperature 10.0 30 > th dose independent rect. 9 4
814 386.09 atmosphere 1015.0 30 < th dose independent rect. 9 4
816 386.09 precipitation 0.1 30 < th dose independent rect. 9 4
818 386.09 atmosphere 1000.0 30 > th dose independent rect. 13 20
820 386.09 precipitation 0.1 30 < th dose dependent rect. 9 4
849 386.19 radiation 10.0 270 < th dose dependent rect. 8 3
867 386.24 radiation 10.0 270 < th dose dependent rect. 9 1
888 386.30 atmosphere 995.0 30 > th dose independent rect. 13 22
896 386.33 temperature 15.0 90 > th dose independent rect. 23 10
920 386.37 temperature 25.0 10 < th dose dependent rect. 2 9
921 386.38 temperature 30.0 270 < th dose dependent rect. 8 1
927 386.39 atmosphere 1010.0 720 < th dose independent rect. 13 2
963 386.52 wind 7.0 720 < th dose independent rect. 4 7