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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0820000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cinnamate-4-hydroxylase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.08 (0.0565) R2 : 0.595
β1 : 1.88 (0.204) R2dD : 0.0816 R2D : 0.0197
β2 : 5.97 (0.316) R2dC : 1.73 R2C : -0.0173
β3 : -3.75 (0.355) R2dE : 0.551 R2E : -1.28
β4 : 3.53 (0.572) R2dD*C : 0.0373 R2D*C : 0.00504
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.373 (0.121) R2dN8 : 0.0117 R2N8 : -0.0288
σ : 1.01
deviance : 469.62
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_____
C
peak time of C : 8.46
E
wheather : temperature
threshold : 11.31
memory length : 406
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.4
open length of G : 13.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
469.37 1.02 4.07 1.9 5.99 -3.74 3.4 0.427 0.372 8.45 11.14 409 21.4 13.9
469.62 1.01 4.08 1.88 5.97 -3.75 3.53 -- 0.373 8.46 11.31 406 21.4 13.9
475.57 1.02 4.03 2.34 6.53 -4.24 -- 4.27 0.415 8.49 8.28 410 21.6 13.8
511.95 1.05 4.09 1.92 5.83 -3.54 -- -- 0.319 8.46 10.68 409 21.4 14
791.19 1.32 4.33 1.45 -- 1.77 -- 2.16 -0.0465 -- -134.7 1354 1.61 16.2
576.19 1.13 4.25 1.34 2.96 -- 2.94 -- -0.0184 8.88 -- -- -- --
605.44 1.15 4.25 1.44 2.95 -- -- -- -0.0166 8.9 -- -- -- --
612.87 1.15 4.27 2.32 -- -3.01 -- -- 0.243 -- -198.6 379 9.48 16.4
603.79 1.14 4.16 -- 5.34 -2.99 -- -- 0.0578 8.54 9.157 378 21.5 14.2
1101.66 1.55 4.33 1.44 -- -- -- -- 0.00392 -- -- -- -- --
660.47 1.2 4.28 -- 2.95 -- -- -- -0.178 8.86 -- -- -- --
645.44 1.18 4.27 -- -- -2.47 -- -- 0.173 -- -262.5 209 11.3 15.6
1156.71 1.59 4.36 -- -- -- -- -- -0.156 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 479.22 temperature 20 270 > th dose independent rect. 23 15
7 487.76 temperature 15 270 > th dose dependent rect. 23 14
11 490.26 temperature 30 270 < th dose dependent rect. 2 9
17 492.06 temperature 15 270 > th dose dependent sin 7 NA
46 497.72 temperature 30 270 < th dose dependent sin 7 NA
49 498.46 temperature 20 270 < th dose independent rect. 24 9
60 499.62 temperature 20 270 > th dose independent sin 7 NA
78 501.36 temperature 20 270 < th dose independent sin 7 NA
101 503.04 temperature 20 720 > th dose independent rect. 21 6
159 506.72 temperature 30 90 < th dose dependent rect. 5 7
170 507.22 temperature 20 90 > th dose independent rect. 23 6
174 507.34 temperature 20 720 > th dose independent rect. 17 11
186 507.81 temperature 20 720 < th dose independent rect. 20 8
193 508.26 temperature 15 720 > th dose dependent rect. 22 6
201 508.38 temperature 20 270 < th dose independent rect. 23 20
217 508.82 temperature 20 720 > th dose independent sin 12 NA
258 509.83 temperature 20 720 < th dose independent rect. 18 12
271 510.17 temperature 20 720 < th dose independent sin 12 NA
291 510.64 temperature 20 720 > th dose independent rect. 17 16
324 511.27 temperature 20 720 > th dose independent rect. 13 16
333 511.53 temperature 20 720 > th dose independent rect. 11 17
356 511.90 temperature 25 270 < th dose dependent rect. 23 20
417 513.06 temperature 20 720 > th dose independent rect. 7 22
419 513.10 temperature 25 720 < th dose dependent rect. 23 3
423 513.14 temperature 25 720 < th dose dependent rect. 20 9
454 513.54 temperature 30 30 < th dose independent rect. 5 8
468 513.78 temperature 25 720 < th dose dependent rect. 19 11
479 513.98 temperature 20 720 < th dose independent rect. 1 1
502 514.38 temperature 25 720 < th dose dependent rect. 24 1
513 514.53 temperature 20 720 < th dose independent rect. 11 19
571 515.26 temperature 25 720 < th dose dependent sin 11 NA
597 515.52 temperature 20 720 > th dose independent rect. 11 22
740 516.79 temperature 20 720 > th dose dependent rect. 24 3
802 517.32 temperature 20 90 > th dose independent rect. 1 4
830 517.60 temperature 20 720 < th dose independent rect. 5 23
873 517.95 temperature 20 270 < th dose independent rect. 3 1
885 518.10 temperature 20 720 > th dose independent no NA NA
965 518.82 temperature 20 720 < th dose independent no NA NA
971 518.89 temperature 20 270 < th dose dependent rect. 3 1