Os01g0818900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0818900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.11 | 0.24 | 3.07 | -0.169 | 0.0558 | 10.3 | 0.105 | -38.2 | -0.0262 | 11.6 | 1.5 | 179 | -- | -- |
| 34.32 | 0.273 | 3.01 | 0.0992 | 0.0524 | -0.0486 | 0.123 | -- | -0.0353 | 13.5 | -0.9969 | 9 | -- | -- |
| 26.11 | 0.238 | 3.08 | -0.208 | 0.0552 | 10.1 | -- | -37.1 | -0.027 | 11.2 | 1.433 | 278 | -- | -- |
| 34.28 | 0.273 | 3.01 | 0.112 | 0.056 | -0.234 | -- | -- | -0.0334 | 14.4 | -4.369 | 114 | -- | -- |
| 26.27 | 0.239 | 3.1 | -0.265 | -- | 10.4 | -- | -38.7 | -0.0297 | -- | 1.373 | 281 | -- | -- |
| 34.31 | 0.275 | 3.01 | 0.099 | 0.0564 | -- | 0.135 | -- | -0.0334 | 14.7 | -- | -- | -- | -- |
| 34.37 | 0.275 | 3.01 | 0.102 | 0.0566 | -- | -- | -- | -0.0327 | 14.2 | -- | -- | -- | -- |
| 34.47 | 0.273 | 3.01 | 0.107 | -- | -0.233 | -- | -- | -0.0355 | -- | -4.211 | 114 | -- | -- |
| 30.19 | 0.256 | 3.01 | -- | 0.0444 | 0.738 | -- | -- | -0.0279 | 12.7 | 1.51 | 181 | -- | -- |
| 34.56 | 0.275 | 3.01 | 0.1 | -- | -- | -- | -- | -0.0341 | -- | -- | -- | -- | -- |
| 34.65 | 0.275 | 3.01 | -- | 0.0547 | -- | -- | -- | -0.0441 | 14.2 | -- | -- | -- | -- |
| 28.39 | 0.248 | 3.01 | -- | -- | 1.65 | -- | -- | -0.0308 | -- | 1.5 | 189 | -- | -- |
| 34.82 | 0.275 | 3.02 | -- | -- | -- | -- | -- | -0.0451 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.59 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 5 | 25.78 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 16 | 1 |
| 8 | 26.09 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 16 | 3 |
| 9 | 26.10 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 1 |
| 10 | 26.10 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 15 | 26.23 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 18 | 1 |
| 17 | 26.26 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 16 | 3 |
| 21 | 26.35 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 1 |
| 53 | 26.74 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 113 | 29.04 | precipitation | 0.1 | 270 | > th | dose dependent | sin | 20 | NA |
| 144 | 29.64 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 18 |
| 159 | 29.76 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 199 | 30.07 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 223 | 30.17 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 18 | 1 |
| 255 | 30.42 | wind | 3.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 260 | 30.46 | temperature | 20.0 | 10 | > th | dose independent | sin | 21 | NA |
| 263 | 30.48 | temperature | 20.0 | 10 | < th | dose independent | sin | 21 | NA |
| 456 | 31.35 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 20 | 1 |
| 478 | 31.42 | precipitation | 0.1 | 270 | > th | dose dependent | no | NA | NA |
| 512 | 31.57 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 11 | 5 |
| 514 | 31.57 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 8 | 9 |
| 521 | 31.59 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 8 | 7 |
| 525 | 31.64 | precipitation | 0.1 | 270 | > th | dose independent | sin | 20 | NA |
| 527 | 31.64 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 14 | 7 |
| 533 | 31.68 | atmosphere | 1000.0 | 720 | > th | dose independent | rect. | 13 | 2 |
| 540 | 31.69 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 17 | 10 |
| 565 | 31.76 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 8 | 5 |
| 580 | 31.82 | precipitation | 0.1 | 270 | < th | dose independent | sin | 20 | NA |
| 583 | 31.82 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 20 | NA |
| 585 | 31.82 | wind | 5.0 | 30 | < th | dose dependent | rect. | 19 | 2 |
| 593 | 31.83 | atmosphere | 1000.0 | 720 | < th | dose dependent | rect. | 11 | 2 |
| 610 | 31.87 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 13 | 4 |
| 676 | 31.98 | humidity | 90.0 | 90 | < th | dose independent | rect. | 19 | 1 |
| 706 | 32.04 | wind | 9.0 | 1440 | > th | dose dependent | rect. | 20 | 14 |
| 712 | 32.06 | atmosphere | 1000.0 | 720 | < th | dose independent | rect. | 11 | 2 |
| 730 | 32.08 | wind | 9.0 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 753 | 32.09 | wind | 9.0 | 1440 | > th | dose independent | rect. | 19 | 3 |
| 763 | 32.09 | wind | 9.0 | 1440 | > th | dose dependent | rect. | 19 | 4 |
| 787 | 32.10 | wind | 9.0 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 822 | 32.12 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 12 | 9 |
| 838 | 32.14 | wind | 5.0 | 270 | > th | dose independent | rect. | 17 | 1 |
| 842 | 32.14 | wind | 9.0 | 1440 | < th | dose independent | rect. | 18 | 8 |
| 850 | 32.15 | wind | 9.0 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 875 | 32.17 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 23 | 19 |
| 908 | 32.20 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 915 | 32.20 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 955 | 32.25 | wind | 7.0 | 1440 | < th | dose independent | rect. | 20 | 1 |