FiT-DB / Search/ Help/ Sample detail

Os01g0818600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0257) R2 : 0.868
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.52 (0.0646) R2dC : 0.861 R2C : 0.853
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.344 (0.0542) R2dN8 : 0.0151 R2N8 : 0.00638
σ : 0.486
deviance : 107.85
__
_____
C
peak time of C : 15.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.35 0.424 10.3 0.228 2.6 -1.2 1.34 1.24 0.288 16.6 5.271 104 -- --
88.23 0.437 10.3 0.231 2.57 -1.22 0.485 -- 0.294 16.6 5.177 109 -- --
85.14 0.43 10.3 0.243 2.62 -1.21 -- 0.887 0.306 16.6 5.042 96 -- --
88.82 0.439 10.3 0.234 2.6 -1.17 -- -- 0.297 16.5 4.96 104 -- --
124.76 0.52 10.2 0.0911 -- -3.26 -- 0.595 0.259 -- 2.668 445 -- --
106.03 0.483 10.2 0.263 3.53 -- -0.039 -- 0.374 15.3 -- -- -- --
106.03 0.482 10.2 0.262 3.53 -- -- -- 0.374 15.3 -- -- -- --
123.07 0.517 10.2 0.0835 -- -3.27 -- -- 0.219 -- 2.84 446 -- --
90.21 0.442 10.3 -- 2.6 -1.18 -- -- 0.269 16.6 4.507 104 -- --
809.25 1.33 10.2 0.113 -- -- -- -- 0.281 -- -- -- -- --
107.85 0.486 10.2 -- 3.52 -- -- -- 0.344 15.3 -- -- -- --
123.25 0.517 10.2 -- -- -3.27 -- -- 0.211 -- 2.8 446 -- --
809.58 1.33 10.2 -- -- -- -- -- 0.268 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 72.92 wind 9.0 270 < th dose independent rect. 12 13
2 73.22 temperature 15.0 270 > th dose independent rect. 1 11
3 73.50 wind 9.0 270 < th dose independent rect. 1 11
5 73.69 atmosphere 995.0 270 > th dose independent rect. 1 11
6 73.69 atmosphere 1015.0 270 < th dose independent rect. 1 11
7 73.69 temperature 10.0 270 > th dose independent rect. 12 13
8 73.78 precipitation 0.1 270 < th dose independent rect. 1 11
9 73.78 precipitation 0.1 270 < th dose dependent rect. 1 11
11 73.94 radiation 10.0 90 < th dose dependent rect. 17 14
15 74.20 precipitation 0.1 270 < th dose independent rect. 12 13
16 74.20 precipitation 0.1 270 < th dose dependent rect. 12 13
22 74.61 radiation 10.0 90 < th dose dependent rect. 17 16
26 75.18 humidity 50.0 270 > th dose independent rect. 1 10
30 75.60 temperature 30.0 90 < th dose independent rect. 17 13
33 75.97 humidity 60.0 90 > th dose independent rect. 17 13
35 76.10 radiation 20.0 270 < th dose independent rect. 16 13
37 76.27 radiation 1.0 30 < th dose dependent rect. 17 6
39 76.46 wind 1.0 270 > th dose independent rect. 11 14
41 76.49 temperature 30.0 90 < th dose independent rect. 17 6
42 76.66 radiation 40.0 270 < th dose dependent rect. 16 13
47 76.99 radiation 1.0 90 < th dose independent rect. 16 7
53 77.25 radiation 40.0 720 < th dose independent rect. 21 11
54 77.25 radiation 10.0 270 < th dose dependent rect. 16 4
55 77.29 humidity 60.0 90 > th dose independent rect. 17 6
56 77.33 radiation 1.0 90 > th dose independent sin 22 NA
61 77.51 radiation 40.0 720 < th dose dependent rect. 17 3
62 77.55 temperature 10.0 720 > th dose independent rect. 21 11
63 77.55 temperature 30.0 720 < th dose independent rect. 21 11
64 77.55 humidity 50.0 720 > th dose independent rect. 21 11
66 77.55 atmosphere 995.0 720 > th dose independent rect. 21 11
67 77.55 temperature 10.0 720 > th dose independent rect. 8 13
69 77.57 temperature 15.0 720 > th dose independent rect. 17 3
70 77.60 wind 9.0 720 < th dose independent rect. 21 11
74 77.62 radiation 10.0 270 < th dose dependent rect. 17 2
76 77.67 radiation 40.0 720 < th dose independent rect. 5 3
78 77.70 temperature 10.0 720 > th dose independent rect. 9 11
79 77.70 atmosphere 1015.0 720 < th dose independent rect. 9 11
80 77.70 temperature 10.0 720 > th dose independent rect. 20 13
81 77.70 humidity 50.0 720 > th dose independent rect. 20 13
82 77.70 atmosphere 995.0 720 > th dose independent rect. 20 13
89 77.76 wind 9.0 720 < th dose independent rect. 20 13
92 77.81 temperature 30.0 10 < th dose independent rect. 18 12
93 77.85 radiation 10.0 14400 < th dose dependent rect. 19 5
94 77.89 humidity 50.0 270 > th dose independent rect. 16 4
96 77.94 atmosphere 1015.0 720 < th dose independent rect. 17 3
97 77.94 radiation 30.0 720 < th dose independent rect. 17 3
99 77.94 temperature 10.0 720 > th dose independent rect. 20 21
101 77.97 wind 7.0 720 < th dose independent rect. 5 3
105 78.03 temperature 10.0 720 > th dose independent rect. 5 3
106 78.03 temperature 30.0 720 < th dose independent rect. 5 3
107 78.03 humidity 50.0 720 > th dose independent rect. 5 3
109 78.03 atmosphere 995.0 720 > th dose independent rect. 5 3
110 78.03 atmosphere 1015.0 720 < th dose independent rect. 5 3
111 78.03 temperature 10.0 720 > th dose independent rect. 8 21
116 78.16 radiation 40.0 720 < th dose independent rect. 20 13
122 78.29 atmosphere 1015.0 720 < th dose independent rect. 8 13
126 78.32 precipitation 0.1 720 < th dose independent rect. 17 3
127 78.32 temperature 15.0 90 > th dose independent rect. 18 12
128 78.32 precipitation 0.1 720 < th dose dependent rect. 17 3
131 78.40 precipitation 0.1 720 < th dose independent rect. 5 3
132 78.40 precipitation 0.1 720 < th dose dependent rect. 5 3
134 78.43 temperature 10.0 270 > th dose independent rect. 5 11
135 78.43 atmosphere 1015.0 270 < th dose independent rect. 5 11
136 78.43 temperature 10.0 270 > th dose independent rect. 16 13
153 78.58 wind 1.0 720 > th dose independent rect. 17 3
164 78.67 radiation 1.0 90 > th dose independent rect. 6 13
179 78.73 wind 9.0 720 < th dose independent rect. 17 3
182 78.75 wind 9.0 270 < th dose independent rect. 5 11
184 78.78 radiation 1.0 30 < th dose dependent sin 18 NA
185 78.78 radiation 40.0 270 < th dose dependent rect. 15 6
188 78.80 temperature 15.0 270 > th dose independent rect. 16 5
191 78.83 precipitation 0.1 270 < th dose independent rect. 5 11
192 78.83 precipitation 0.1 270 < th dose dependent rect. 5 11
197 78.89 precipitation 0.1 720 < th dose independent rect. 8 21
198 78.89 precipitation 0.1 720 < th dose dependent rect. 8 21
207 78.94 radiation 1.0 30 < th dose dependent rect. 6 17
210 78.95 radiation 20.0 720 < th dose dependent rect. 23 7
216 79.01 temperature 30.0 270 < th dose independent rect. 15 6
230 79.13 precipitation 0.1 720 < th dose independent rect. 8 13
231 79.13 precipitation 0.1 720 < th dose dependent rect. 8 13
232 79.14 temperature 15.0 720 > th dose independent rect. 18 1
247 79.18 radiation 1.0 270 < th dose independent rect. 18 1
256 79.20 wind 9.0 270 < th dose independent rect. 16 13
262 79.25 humidity 60.0 10 > th dose independent rect. 18 12
275 79.32 temperature 10.0 720 > th dose independent rect. 11 7
276 79.32 atmosphere 1015.0 720 < th dose independent rect. 11 7
277 79.32 temperature 10.0 720 > th dose independent rect. 18 17
300 79.39 radiation 20.0 90 < th dose independent rect. 18 12
308 79.41 wind 1.0 90 > th dose independent rect. 6 12
309 79.41 atmosphere 995.0 90 > th dose independent rect. 18 12
311 79.42 precipitation 0.1 720 < th dose independent rect. 9 11
312 79.42 precipitation 0.1 720 < th dose dependent rect. 9 11
318 79.44 temperature 10.0 90 > th dose dependent rect. 18 12
323 79.47 wind 9.0 90 < th dose independent rect. 18 12
325 79.48 radiation 1.0 30 < th dose independent sin 18 NA
328 79.49 wind 9.0 270 < th dose independent rect. 20 21
336 79.51 temperature 30.0 1440 < th dose independent rect. 19 12
355 79.55 radiation 1.0 90 < th dose independent sin 20 NA
358 79.56 wind 9.0 720 < th dose independent rect. 18 17
372 79.64 wind 9.0 270 < th dose dependent rect. 1 11
374 79.66 radiation 1.0 1440 < th dose dependent rect. 19 5
381 79.70 temperature 10.0 1440 > th dose independent rect. 19 5
384 79.70 temperature 30.0 1440 < th dose independent rect. 19 5
388 79.70 humidity 50.0 1440 > th dose independent rect. 19 5
390 79.70 atmosphere 995.0 1440 > th dose independent rect. 19 5
391 79.70 radiation 1.0 1440 < th dose independent rect. 19 5
411 79.70 temperature 10.0 1440 > th dose independent rect. 24 19
424 79.75 atmosphere 995.0 270 > th dose independent rect. 17 3
444 79.81 atmosphere 995.0 270 > th dose independent rect. 16 13
469 79.93 precipitation 0.1 720 < th dose independent rect. 21 11
472 79.93 precipitation 0.1 720 < th dose dependent rect. 21 11
474 79.94 temperature 10.0 720 > th dose independent rect. 23 7
475 79.94 temperature 30.0 720 < th dose independent rect. 23 7
476 79.94 humidity 50.0 720 > th dose independent rect. 23 7
479 79.94 atmosphere 995.0 720 > th dose independent rect. 23 7
480 79.94 radiation 20.0 720 < th dose independent rect. 23 7
483 79.94 temperature 10.0 720 > th dose independent rect. 6 17
484 79.96 wind 9.0 720 < th dose independent rect. 23 7
485 79.96 radiation 1.0 90 < th dose independent rect. 16 15
498 80.06 radiation 1.0 30 < th dose independent rect. 6 17
513 80.14 precipitation 0.1 270 < th dose independent rect. 20 21
516 80.14 precipitation 0.1 270 < th dose dependent rect. 20 21
561 80.32 wind 9.0 270 < th dose independent rect. 21 19
577 80.39 radiation 1.0 90 < th dose independent rect. 16 18
591 80.47 precipitation 0.1 270 < th dose independent rect. 16 13
592 80.47 precipitation 0.1 270 < th dose dependent rect. 16 13
608 80.54 precipitation 0.1 90 < th dose independent rect. 18 12
610 80.54 precipitation 0.1 90 < th dose dependent rect. 18 12
614 80.55 precipitation 0.1 720 < th dose independent rect. 20 13
615 80.55 radiation 1.0 90 < th dose independent rect. 4 19
616 80.55 precipitation 0.1 720 < th dose dependent rect. 20 13
620 80.57 atmosphere 995.0 270 > th dose independent rect. 16 5
623 80.59 temperature 10.0 720 > th dose independent rect. 18 10
624 80.59 humidity 50.0 720 > th dose independent rect. 18 10
625 80.59 radiation 20.0 720 < th dose independent rect. 18 10
628 80.59 temperature 10.0 720 > th dose independent rect. 4 14
629 80.59 atmosphere 1015.0 720 < th dose independent rect. 4 14
636 80.61 wind 9.0 90 < th dose dependent rect. 3 10
662 80.70 wind 7.0 720 < th dose independent rect. 6 1
664 80.70 temperature 10.0 720 > th dose independent rect. 6 1
666 80.70 temperature 30.0 720 < th dose independent rect. 6 1
667 80.70 humidity 50.0 720 > th dose independent rect. 6 1
670 80.70 atmosphere 995.0 720 > th dose independent rect. 6 1
671 80.70 atmosphere 1015.0 720 < th dose independent rect. 6 1
672 80.70 atmosphere 1015.0 720 < th dose independent rect. 18 1
673 80.70 radiation 30.0 720 < th dose independent rect. 6 1
679 80.70 temperature 10.0 720 > th dose independent rect. 7 23
680 80.70 temperature 10.0 720 > th dose independent rect. 19 23
690 80.72 temperature 10.0 720 > th dose dependent rect. 18 1
691 80.73 wind 9.0 720 < th dose independent rect. 18 10
700 80.76 radiation 40.0 720 < th dose dependent rect. 18 10
702 80.78 radiation 1.0 720 < th dose independent rect. 23 6
739 80.90 temperature 30.0 270 < th dose independent rect. 1 10
740 80.90 atmosphere 995.0 270 > th dose independent rect. 5 11
742 80.90 precipitation 0.1 270 < th dose independent rect. 21 19
743 80.90 radiation 1.0 90 < th dose dependent rect. 4 19
744 80.90 precipitation 0.1 270 < th dose dependent rect. 21 19
746 80.91 humidity 50.0 720 > th dose independent rect. 18 17
758 80.93 precipitation 0.1 720 < th dose independent rect. 6 1
763 80.93 precipitation 0.1 720 < th dose dependent rect. 6 1
772 80.96 atmosphere 995.0 270 > th dose dependent rect. 16 4
782 80.99 precipitation 0.1 720 < th dose independent rect. 18 1
786 80.99 precipitation 0.1 720 < th dose dependent rect. 18 1
792 81.03 wind 9.0 720 < th dose independent rect. 18 1
793 81.04 precipitation 0.1 720 < th dose independent rect. 7 23
795 81.04 precipitation 0.1 720 < th dose dependent rect. 7 23
851 81.22 wind 1.0 720 > th dose independent rect. 18 1
860 81.24 precipitation 0.1 720 < th dose independent rect. 11 6
862 81.24 precipitation 0.1 720 < th dose dependent rect. 11 6
928 81.42 atmosphere 995.0 270 > th dose independent rect. 21 19
939 81.45 wind 9.0 720 < th dose independent rect. 12 5
942 81.45 temperature 10.0 270 > th dose dependent rect. 17 3
995 81.57 wind 9.0 270 < th dose independent rect. 19 23