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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0817600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.56 (0.0617) R2 : 0.549
β1 : 0.0765 (0.234) R2dD : 0.000206 R2D : 0.00122
β2 : 1.35 (0.179) R2dC : 0.0739 R2C : 0.189
β3 : 4.39 (0.321) R2dE : 0.27 R2E : 0.431
β4 : 4.19 (0.732) R2dD*C : 0.0342 R2D*C : 0.0532
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.365 (0.14) R2dN8 : 0.0108 R2N8 : 0.0334
σ : 1.14
deviance : 598.51
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_____
C
peak time of C : 18.3
E
wheather : temperature
threshold : 16.58
memory length : 294
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.1
open length of G : 22.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
590.68 1.14 5.61 -0.447 1.35 4.22 5.01 -3.49 0.239 18.5 17.83 285 12.1 22.7
598.51 1.14 5.56 0.0765 1.35 4.39 4.19 -- 0.365 18.3 16.58 294 12.1 22.8
643.83 1.18 5.59 -0.131 1.31 4.35 -- -1.17 0.294 18.2 17.57 294 12.1 22.7
641.38 1.18 5.54 0.0639 1.37 4.38 -- -- 0.391 17.8 17.23 300 12.1 22.5
712.01 1.24 5.55 -0.173 -- 5.14 -- -0.218 0.225 -- 18.46 306 11.9 22.8
832.99 1.35 5.41 1.06 2.5 -- 5.3 -- 1.09 18.4 -- -- -- --
901.57 1.41 5.4 0.995 2.53 -- -- -- 1.11 18.2 -- -- -- --
711.91 1.24 5.55 -0.169 -- 5.15 -- -- 0.211 -- 18.38 309 11.8 22.8
641.47 1.18 5.54 -- 1.38 4.36 -- -- 0.394 17.8 17.3 299 12.1 22.5
1232.65 1.64 5.36 0.924 -- -- -- -- 1.06 -- -- -- -- --
927.65 1.42 5.43 -- 2.51 -- -- -- 1 18.2 -- -- -- --
712.57 1.24 5.55 -- -- 5.09 -- -- 0.23 -- 18.47 310 11.8 22.8
1255.19 1.65 5.38 -- -- -- -- -- 0.953 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 599.89 temperature 15 270 > th dose dependent rect. 12 23
3 602.04 temperature 30 270 < th dose dependent rect. 7 22
10 610.39 temperature 20 1440 > th dose independent rect. 21 12
13 610.69 temperature 20 1440 < th dose independent rect. 20 11
34 612.52 temperature 20 1440 > th dose independent sin 10 NA
48 613.23 temperature 20 1440 < th dose independent sin 10 NA
49 613.25 temperature 20 1440 > th dose independent rect. 20 8
55 613.45 temperature 15 720 > th dose dependent rect. 21 20
59 613.58 temperature 20 1440 > th dose independent rect. 5 2
113 616.23 temperature 20 1440 < th dose independent rect. 5 2
247 621.35 temperature 25 1440 < th dose dependent rect. 20 15
348 624.20 temperature 15 270 > th dose dependent rect. 2 23
352 624.23 temperature 25 1440 < th dose dependent sin 9 NA
360 624.46 temperature 25 1440 < th dose dependent rect. 2 1
407 625.40 temperature 25 1440 < th dose dependent rect. 21 8
551 627.92 temperature 20 1440 > th dose independent rect. 1 2
555 628.02 temperature 15 1440 > th dose dependent rect. 2 1
582 628.51 temperature 20 1440 < th dose independent rect. 2 1
632 629.24 temperature 15 1440 > th dose dependent rect. 1 5
640 629.31 temperature 15 270 > th dose dependent rect. 23 23
683 630.05 temperature 25 1440 < th dose dependent rect. 7 2
732 630.73 temperature 20 1440 > th dose independent no NA NA
795 631.69 temperature 20 1440 > th dose independent rect. 5 23
820 632.07 temperature 15 270 > th dose dependent no NA NA
855 632.55 temperature 20 1440 < th dose independent no NA NA
872 632.76 temperature 20 1440 > th dose independent rect. 1 23
880 632.93 temperature 25 720 < th dose dependent rect. 5 16
936 633.63 temperature 25 1440 < th dose dependent rect. 5 1
946 633.72 temperature 20 1440 < th dose independent rect. 5 23
988 634.31 temperature 30 270 < th dose dependent no NA NA
997 634.41 temperature 30 270 < th dose dependent rect. 16 23