Os01g0817400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Sodium/hydrogen exchanger family protein.
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Os01g0817400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Sodium/hydrogen exchanger family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 324.04 | 0.846 | 3.37 | 0.412 | 0.798 | -1.68 | -1.13 | 1.49 | 0.37 | 3.7 | 25.7 | 1217 | -- | -- |
| 325.7 | 0.841 | 3.43 | 0.0338 | 0.797 | -1.59 | -0.88 | -- | 0.207 | 3.58 | 26.3 | 1202 | -- | -- |
| 325.33 | 0.84 | 3.38 | 0.426 | 0.794 | -1.77 | -- | 1.4 | 0.327 | 3.12 | 26.4 | 1166 | -- | -- |
| 327.24 | 0.843 | 3.43 | 0.0587 | 0.8 | -1.66 | -- | -- | 0.216 | 2.98 | 26.23 | 1158 | -- | -- |
| 356.88 | 0.88 | 3.39 | 0.477 | -- | -1.34 | -- | 1.44 | 0.279 | -- | 26.4 | 1365 | -- | -- |
| 389.6 | 0.925 | 3.53 | -0.458 | 0.559 | -- | -1.43 | -- | -0.268 | 4.83 | -- | -- | -- | -- |
| 394.75 | 0.93 | 3.53 | -0.453 | 0.549 | -- | -- | -- | -0.261 | 4.51 | -- | -- | -- | -- |
| 353.06 | 0.875 | 3.44 | 0.0295 | -- | -1.3 | -- | -- | 0.174 | -- | 26 | 1885 | -- | -- |
| 327.3 | 0.843 | 3.43 | -- | 0.8 | -1.65 | -- | -- | 0.204 | 2.98 | 26.24 | 1156 | -- | -- |
| 410.83 | 0.947 | 3.53 | -0.432 | -- | -- | -- | -- | -0.246 | -- | -- | -- | -- | -- |
| 400.16 | 0.936 | 3.52 | -- | 0.54 | -- | -- | -- | -0.21 | 4.53 | -- | -- | -- | -- |
| 353.07 | 0.875 | 3.44 | -- | -- | -1.28 | -- | -- | 0.152 | -- | 25.98 | 1885 | -- | -- |
| 415.75 | 0.952 | 3.52 | -- | -- | -- | -- | -- | -0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 326.12 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 19 |
| 4 | 326.97 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 9 | 327.33 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 10 | 327.33 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 11 | 327.34 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 12 | 327.34 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 19 | 327.65 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 29 | 327.81 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 14 | 13 |
| 56 | 327.95 | temperature | 20.0 | 43200 | < th | dose dependent | sin | 15 | NA |
| 58 | 327.96 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 70 | 328.01 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 123 | 328.26 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 140 | 328.33 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 17 |
| 150 | 328.35 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 183 | 328.44 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 186 | 328.45 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 237 | 328.54 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 2 | 22 |
| 242 | 328.55 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 259 | 328.57 | temperature | 20.0 | 43200 | < th | dose dependent | no | NA | NA |
| 268 | 328.58 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 18 | 23 |
| 276 | 328.59 | temperature | 20.0 | 43200 | < th | dose dependent | rect. | 21 | 23 |
| 332 | 328.67 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 333 | 328.67 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 366 | 328.71 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 370 | 328.72 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 474 | 328.95 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 505 | 329.04 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 506 | 329.04 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 540 | 329.12 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 9 | 7 |
| 544 | 329.13 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 557 | 329.19 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 574 | 329.23 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 11 | 5 |
| 622 | 329.36 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 659 | 329.48 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 718 | 329.64 | temperature | 20.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 745 | 329.70 | temperature | 20.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 766 | 329.74 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 789 | 329.80 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 14 | 3 |
| 864 | 329.97 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 7 | 12 |
| 909 | 330.09 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 944 | 330.16 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 7 | 16 |