Os01g0816100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAC domain protein.
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Os01g0816100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAC domain protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 344.82 | 0.872 | 7.81 | 1.21 | 1.31 | -2.03 | 1.7 | 3.13 | 1.41 | 23.8 | 26.35 | 1374 | -- | -- |
| 366.21 | 0.891 | 7.97 | 0.767 | 1.24 | -1.74 | 1.67 | -- | 1.01 | 23.2 | 26.3 | 1566 | -- | -- |
| 357.14 | 0.88 | 7.8 | 1.28 | 1.31 | -2.03 | -- | 3.6 | 1.44 | 23.8 | 26.34 | 1374 | -- | -- |
| 370.21 | 0.896 | 7.97 | 0.415 | 1.27 | -1.78 | -- | -- | 0.984 | 23.5 | 27.18 | 1469 | -- | -- |
| 440.45 | 0.983 | 8 | -0.236 | -- | -1.12 | -- | -0.362 | 0.708 | -- | 27 | 1539 | -- | -- |
| 462.23 | 1.01 | 8.06 | -0.427 | 1.15 | -- | 1.65 | -- | 0.54 | 23.4 | -- | -- | -- | -- |
| 474.03 | 1.02 | 8.06 | -0.493 | 1.14 | -- | -- | -- | 0.534 | 23.4 | -- | -- | -- | -- |
| 440.76 | 0.982 | 7.99 | -0.168 | -- | -1.14 | -- | -- | 0.728 | -- | 27 | 1539 | -- | -- |
| 367.64 | 0.893 | 7.97 | -- | 1.24 | -1.63 | -- | -- | 0.921 | 23.7 | 27.11 | 1418 | -- | -- |
| 556.01 | 1.1 | 8.03 | -0.464 | -- | -- | -- | -- | 0.546 | -- | -- | -- | -- | -- |
| 480.45 | 1.03 | 8.05 | -- | 1.14 | -- | -- | -- | 0.589 | 23.4 | -- | -- | -- | -- |
| 441.5 | 0.982 | 7.99 | -- | -- | -1.15 | -- | -- | 0.748 | -- | 27 | 1539 | -- | -- |
| 561.68 | 1.11 | 8.02 | -- | -- | -- | -- | -- | 0.597 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 336.92 | temperature | 20 | 30 | > th | dose dependent | rect. | 8 | 23 |
| 3 | 337.26 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 4 | 337.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 5 | 337.48 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 10 | 338.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 69 | 345.69 | temperature | 25 | 1440 | > th | dose dependent | sin | 22 | NA |
| 368 | 349.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 428 | 350.39 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 482 | 351.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 498 | 351.32 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 19 |
| 502 | 351.34 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 536 | 351.65 | humidity | 90 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 557 | 351.82 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 561 | 351.87 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 22 |
| 599 | 352.30 | humidity | 90 | 43200 | < th | dose independent | rect. | 24 | 23 |
| 607 | 352.36 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 611 | 352.40 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 624 | 352.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 627 | 352.50 | humidity | 90 | 43200 | < th | dose independent | no | NA | NA |
| 633 | 352.55 | humidity | 90 | 43200 | < th | dose independent | rect. | 11 | 23 |
| 645 | 352.65 | humidity | 90 | 43200 | < th | dose independent | sin | 5 | NA |
| 648 | 352.67 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 778 | 353.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 825 | 354.18 | humidity | 90 | 43200 | < th | dose independent | sin | 16 | NA |
| 853 | 354.41 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 868 | 354.63 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 876 | 354.71 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 879 | 354.72 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 886 | 354.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 1 | 12 |
| 888 | 354.79 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 18 |
| 890 | 354.81 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 20 |
| 945 | 355.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 22 |
| 960 | 355.21 | humidity | 90 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 986 | 355.34 | humidity | 90 | 43200 | > th | dose independent | sin | 5 | NA |