Os01g0815900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0815900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.05 | 0.479 | 7.36 | 1.9 | 2.57 | 1.03 | -0.269 | -1.25 | 0.32 | 19.1 | 25.68 | 263 | -- | -- |
| 104.43 | 0.476 | 7.34 | 2.03 | 2.58 | 0.913 | -0.375 | -- | 0.356 | 19.1 | 25.59 | 268 | -- | -- |
| 104.23 | 0.475 | 7.37 | 1.89 | 2.57 | 1.03 | -- | -1.35 | 0.311 | 19.2 | 25.57 | 262 | -- | -- |
| 104.81 | 0.477 | 7.35 | 2.05 | 2.59 | 0.886 | -- | -- | 0.35 | 19.1 | 25.53 | 262 | -- | -- |
| 315.15 | 0.827 | 7.41 | 1.03 | -- | 3.23 | -- | -3.25 | -0.0875 | -- | 24.51 | 486 | -- | -- |
| 118.07 | 0.509 | 7.34 | 2.19 | 2.92 | -- | -0.031 | -- | 0.399 | 18.8 | -- | -- | -- | -- |
| 118.07 | 0.509 | 7.34 | 2.19 | 2.92 | -- | -- | -- | 0.399 | 18.8 | -- | -- | -- | -- |
| 326.04 | 0.841 | 7.33 | 1.62 | -- | 2.87 | -- | -- | 0.0896 | -- | 24.5 | 470 | -- | -- |
| 181.98 | 0.628 | 7.45 | -- | 2.74 | 1.55 | -- | -- | -0.219 | 18.8 | 5.338 | 4816 | -- | -- |
| 564.37 | 1.11 | 7.28 | 2.13 | -- | -- | -- | -- | 0.343 | -- | -- | -- | -- | -- |
| 244.39 | 0.731 | 7.4 | -- | 2.89 | -- | -- | -- | 0.155 | 18.9 | -- | -- | -- | -- |
| 393.24 | 0.924 | 7.39 | -- | -- | 3.12 | -- | -- | -0.127 | -- | 24.37 | 489 | -- | -- |
| 683.57 | 1.22 | 7.33 | -- | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.76 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 10 | 102.34 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 11 | 102.35 | temperature | 25 | 10 | > th | dose dependent | sin | 18 | NA |
| 21 | 102.50 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 19 |
| 26 | 102.59 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 20 |
| 32 | 102.64 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 13 |
| 74 | 103.17 | temperature | 25 | 270 | > th | dose dependent | sin | 23 | NA |
| 115 | 103.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 17 |
| 154 | 103.81 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 23 |
| 163 | 103.91 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 173 | 103.96 | temperature | 25 | 270 | > th | dose dependent | rect. | 24 | 21 |
| 195 | 104.03 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 215 | 104.11 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 265 | 104.22 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 304 | 104.49 | temperature | 10 | 90 | > th | dose dependent | sin | 21 | NA |
| 336 | 104.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 13 |
| 342 | 104.65 | temperature | 10 | 10 | > th | dose dependent | sin | 20 | NA |
| 350 | 104.69 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 14 |
| 453 | 105.01 | temperature | 30 | 10 | < th | dose dependent | sin | 20 | NA |
| 464 | 105.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 472 | 105.07 | temperature | 20 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 479 | 105.09 | temperature | 30 | 270 | > th | dose independent | rect. | 10 | 7 |
| 495 | 105.13 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 577 | 105.37 | wind | 3 | 720 | > th | dose dependent | rect. | 11 | 1 |
| 592 | 105.44 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 1 |
| 630 | 105.56 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 652 | 105.65 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 654 | 105.66 | wind | 5 | 720 | > th | dose independent | rect. | 11 | 1 |
| 718 | 105.81 | temperature | 30 | 270 | > th | dose independent | sin | 23 | NA |
| 759 | 105.89 | temperature | 30 | 270 | < th | dose independent | sin | 23 | NA |
| 818 | 106.00 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 23 |
| 849 | 106.04 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 7 |
| 893 | 106.10 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 16 |
| 940 | 106.17 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 962 | 106.20 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 13 |