Os01g0814300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0814300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.07 | 0.568 | 4.28 | 0.47 | 1.7 | 1.28 | 1.14 | -0.509 | 0.203 | 19.7 | 23.69 | 351 | -- | -- |
| 146.11 | 0.563 | 4.27 | 0.544 | 1.72 | 1.24 | 1.09 | -- | 0.214 | 19.7 | 23.3 | 350 | -- | -- |
| 149.41 | 0.569 | 4.27 | 0.499 | 1.69 | 1.28 | -- | -0.0321 | 0.214 | 19.7 | 23.7 | 360 | -- | -- |
| 149.37 | 0.569 | 4.27 | 0.515 | 1.69 | 1.27 | -- | -- | 0.223 | 19.7 | 23.66 | 360 | -- | -- |
| 246.29 | 0.731 | 4.3 | -0.147 | -- | 2.76 | -- | -2.72 | -0.00501 | -- | 24.4 | 493 | -- | -- |
| 172.65 | 0.616 | 4.25 | 0.793 | 2.2 | -- | 1.44 | -- | 0.384 | 19.2 | -- | -- | -- | -- |
| 178.09 | 0.625 | 4.24 | 0.765 | 2.21 | -- | -- | -- | 0.387 | 19.1 | -- | -- | -- | -- |
| 249 | 0.735 | 4.25 | 0.267 | -- | 2.54 | -- | -- | 0.106 | -- | 24.36 | 490 | -- | -- |
| 155.86 | 0.581 | 4.29 | -- | 1.65 | 1.4 | -- | -- | 0.133 | 19.7 | 23.15 | 360 | -- | -- |
| 435.34 | 0.975 | 4.19 | 0.723 | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
| 193.49 | 0.651 | 4.26 | -- | 2.2 | -- | -- | -- | 0.302 | 19.1 | -- | -- | -- | -- |
| 250.78 | 0.738 | 4.26 | -- | -- | 2.58 | -- | -- | 0.0667 | -- | 24.3 | 494 | -- | -- |
| 449.11 | 0.989 | 4.21 | -- | -- | -- | -- | -- | 0.268 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 135.87 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 10 |
| 2 | 136.61 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 19 |
| 18 | 137.98 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 18 |
| 37 | 138.92 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 22 |
| 45 | 139.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 17 |
| 66 | 140.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 9 |
| 68 | 140.25 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 19 |
| 93 | 141.09 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 8 |
| 104 | 141.38 | wind | 7 | 270 | < th | dose independent | rect. | 23 | 18 |
| 111 | 141.47 | temperature | 10 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 114 | 141.54 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 23 |
| 123 | 141.65 | temperature | 15 | 90 | > th | dose dependent | rect. | 1 | 20 |
| 147 | 142.02 | temperature | 15 | 10 | > th | dose dependent | rect. | 2 | 19 |
| 183 | 142.57 | temperature | 10 | 10 | > th | dose dependent | sin | 18 | NA |
| 196 | 142.74 | temperature | 20 | 30 | > th | dose dependent | sin | 18 | NA |
| 231 | 143.04 | wind | 7 | 270 | < th | dose independent | rect. | 10 | 8 |
| 319 | 143.69 | temperature | 10 | 270 | > th | dose dependent | sin | 22 | NA |
| 332 | 143.79 | wind | 9 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 333 | 143.79 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 21 |
| 335 | 143.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 343 | 143.86 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 8 |
| 348 | 143.88 | wind | 9 | 270 | < th | dose dependent | rect. | 23 | 18 |
| 376 | 144.04 | temperature | 25 | 270 | > th | dose dependent | sin | 22 | NA |
| 453 | 144.48 | radiation | 20 | 270 | < th | dose dependent | rect. | 6 | 17 |
| 518 | 144.92 | radiation | 20 | 270 | < th | dose dependent | rect. | 5 | 19 |
| 591 | 145.37 | humidity | 70 | 270 | > th | dose independent | rect. | 5 | 18 |
| 613 | 145.49 | temperature | 30 | 30 | < th | dose dependent | sin | 19 | NA |
| 631 | 145.61 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 638 | 145.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 8 | 15 |
| 786 | 146.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 4 | 15 |
| 828 | 146.45 | temperature | 30 | 270 | > th | dose independent | sin | 0 | NA |
| 844 | 146.52 | humidity | 50 | 270 | > th | dose independent | rect. | 15 | 9 |
| 875 | 146.64 | radiation | 30 | 270 | < th | dose dependent | rect. | 14 | 9 |
| 897 | 146.75 | radiation | 10 | 270 | < th | dose independent | rect. | 6 | 17 |
| 898 | 146.75 | temperature | 30 | 270 | > th | dose independent | rect. | 17 | 23 |
| 951 | 146.95 | radiation | 20 | 270 | < th | dose independent | rect. | 15 | 9 |
| 952 | 146.95 | radiation | 20 | 270 | < th | dose independent | rect. | 5 | 19 |