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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0813700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Hydroxyisourate hydrolase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.85 (0.0482) R2 : 0.519
β1 : -3.04 (0.172) R2dD : 0.35 R2D : 0.233
β2 : 0.791 (0.138) R2dC : 0.0499 R2C : 0.0714
β3 : 1.46 (0.196) R2dE : 0.0989 R2E : 0.0464
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.08 (0.112) R2dN8 : 0.165 R2N8 : -0.0484
σ : 0.874
deviance : 352.42
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_____
C
peak time of C : 3.24
E
wheather : atmosphere
threshold : 1005
memory length : 11
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.0167
open length of G : 9.86

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
334.69 0.86 4.85 -3.08 0.78 1.53 2.73 -1.88 -1.12 3.12 1005 10 0.0166 8.97
337.31 0.855 4.87 -3.02 0.791 1.54 2.54 -- -1.11 2.96 1005 12 0.00226 9.85
354.35 0.883 4.85 -3.05 0.868 1.39 -- -0.0144 -1.08 3.41 1005 7 0.181 8.82
352.42 0.874 4.85 -3.04 0.791 1.46 -- -- -1.08 3.24 1005 11 0.0167 9.86
367.06 0.892 4.86 -2.98 -- 1.84 -- 0.822 -1.1 -- 1003 2 0.0167 9.02
375.28 0.908 4.75 -2.96 1.42 -- 1.98 -- -0.688 3.99 -- -- -- --
385.88 0.92 4.75 -2.98 1.44 -- -- -- -0.7 4.28 -- -- -- --
367.89 0.893 4.86 -3.05 -- 1.84 -- -- -1.12 -- 1003 2 0.0122 8.99
598.62 1.14 4.8 -- 0.771 1.39 -- -- -0.777 2.95 1005 5 0.0167 9.95
498.3 1.04 4.76 -2.92 -- -- -- -- -0.661 -- -- -- -- --
620.11 1.16 4.68 -- 1.39 -- -- -- -0.368 4.32 -- -- -- --
607.6 1.15 4.75 -- -- 1.65 -- -- -0.671 -- 1001 2 0.0167 9.98
723.76 1.26 4.69 -- -- -- -- -- -0.337 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 334.90 atmosphere 1005 10 > th dose dependent rect. 24 9
5 340.69 atmosphere 1005 10 > th dose dependent rect. 2 7
14 343.42 humidity 80 1440 < th dose dependent rect. 20 7
16 343.54 humidity 80 720 > th dose independent rect. 19 10
18 343.62 humidity 80 720 > th dose independent rect. 18 14
45 345.26 humidity 90 720 < th dose dependent rect. 21 2
50 345.42 humidity 80 720 > th dose independent sin 11 NA
56 345.74 humidity 90 720 < th dose independent rect. 21 2
112 347.77 humidity 50 720 > th dose dependent rect. 18 10
140 348.47 humidity 80 720 < th dose independent rect. 18 14
152 348.84 atmosphere 1005 90 > th dose independent rect. 2 7
154 348.85 humidity 80 720 < th dose independent rect. 18 11
168 349.21 humidity 80 720 < th dose independent sin 13 NA
169 349.24 humidity 80 720 < th dose independent rect. 19 8
203 349.90 atmosphere 1005 270 > th dose independent rect. 23 9
356 352.17 atmosphere 1005 10 > th dose independent rect. 24 10
405 352.54 humidity 80 720 > th dose independent rect. 23 7
415 352.68 humidity 90 720 < th dose dependent sin 12 NA
419 352.70 humidity 60 720 > th dose dependent sin 12 NA
484 353.24 atmosphere 1005 720 > th dose independent rect. 21 4
545 353.78 humidity 80 720 < th dose independent rect. 12 20
565 353.99 wind 1 30 > th dose dependent rect. 6 13
571 354.05 wind 1 30 > th dose dependent rect. 4 15
581 354.12 temperature 25 270 < th dose independent rect. 2 9
632 354.41 temperature 20 720 < th dose independent rect. 24 1
668 354.71 temperature 25 90 > th dose independent rect. 9 4
702 354.95 temperature 30 10 < th dose independent rect. 4 14
738 355.18 wind 5 720 > th dose independent rect. 7 3
745 355.20 humidity 50 720 > th dose dependent rect. 18 3
748 355.21 temperature 20 90 > th dose dependent rect. 9 4
771 355.36 humidity 90 720 > th dose independent rect. 22 1
816 355.54 wind 3 90 > th dose independent rect. 19 10
820 355.56 wind 1 14400 > th dose independent rect. 1 1
826 355.60 temperature 25 90 > th dose independent rect. 4 9
831 355.62 wind 1 14400 < th dose independent rect. 22 5
842 355.67 atmosphere 1005 720 > th dose independent rect. 9 4
844 355.67 wind 7 270 < th dose independent rect. 7 14
849 355.69 temperature 20 90 > th dose dependent rect. 6 7
859 355.73 wind 1 270 > th dose independent rect. 2 15
862 355.75 temperature 25 270 > th dose independent rect. 9 2
863 355.75 wind 7 30 < th dose independent rect. 10 16
872 355.78 atmosphere 1000 720 > th dose dependent rect. 21 4
888 355.82 temperature 30 90 < th dose dependent sin 4 NA
912 355.95 temperature 15 270 > th dose dependent rect. 7 4
924 355.99 temperature 20 720 < th dose independent rect. 23 6
925 356.00 wind 7 720 < th dose independent rect. 9 4
937 356.02 wind 1 720 > th dose dependent rect. 7 2
954 356.10 temperature 15 270 > th dose dependent rect. 9 2
958 356.13 wind 5 720 < th dose independent rect. 9 2
974 356.20 temperature 30 10 < th dose independent rect. 2 16
994 356.27 temperature 30 90 < th dose dependent rect. 2 10