Os01g0813000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histidine triad (HIT) protein family protein.
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Os01g0813000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histidine triad (HIT) protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.63 | 0.414 | 8.67 | -2.09 | 1.09 | -3.03 | -0.401 | -2.35 | -0.281 | 22.8 | 26.59 | 845 | -- | -- |
| 81.84 | 0.421 | 8.73 | -2.54 | 1.22 | -2.92 | 0.077 | -- | -0.387 | 22.2 | 27.52 | 1034 | -- | -- |
| 77.8 | 0.411 | 8.68 | -2.16 | 1.2 | -3.03 | -- | -2.05 | -0.3 | 22.3 | 26.36 | 982 | -- | -- |
| 81.85 | 0.421 | 8.73 | -2.55 | 1.22 | -2.93 | -- | -- | -0.383 | 22.2 | 27.66 | 1043 | -- | -- |
| 136.21 | 0.544 | 8.68 | -2.35 | -- | -3.74 | -- | -1.89 | -0.415 | -- | 28.7 | 827 | -- | -- |
| 204.7 | 0.671 | 8.59 | -1.69 | 1.62 | -- | 0.0877 | -- | 0.263 | 22.7 | -- | -- | -- | -- |
| 204.73 | 0.67 | 8.59 | -1.69 | 1.62 | -- | -- | -- | 0.263 | 22.7 | -- | -- | -- | -- |
| 139.88 | 0.551 | 8.72 | -2.72 | -- | -3.7 | -- | -- | -0.49 | -- | 29.33 | 833 | -- | -- |
| 225.79 | 0.7 | 8.6 | -- | 1.55 | -2.12 | -- | -- | 0.194 | 0.023 | 43.16 | 376 | -- | -- |
| 366.28 | 0.894 | 8.55 | -1.66 | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
| 280.29 | 0.783 | 8.55 | -- | 1.61 | -- | -- | -- | 0.451 | 22.6 | -- | -- | -- | -- |
| 311.01 | 0.821 | 8.61 | -- | -- | -2.64 | -- | -- | 0.0262 | -- | 30.11 | 789 | -- | -- |
| 439.16 | 0.978 | 8.51 | -- | -- | -- | -- | -- | 0.456 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.18 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 20 |
| 16 | 77.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 81 | 80.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 105 | 80.75 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 168 | 82.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 171 | 82.72 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 175 | 82.78 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 209 | 83.08 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 307 | 83.70 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 394 | 84.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 4 |
| 409 | 84.22 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 846 | 86.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 884 | 86.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 919 | 86.52 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 989 | 86.80 | temperature | 25 | 720 | < th | dose dependent | sin | 1 | NA |