Os01g0812000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GAMyb protein.
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Os01g0812000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GAMyb protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.38 | 0.25 | 9.27 | -0.246 | 1.33 | -0.895 | -0.15 | -1.65 | 0.202 | 2.9 | 11.43 | 78 | -- | -- |
| 29.94 | 0.255 | 9.24 | -0.0109 | 1.34 | -0.899 | 0.274 | -- | 0.265 | 2.93 | 12.85 | 71 | -- | -- |
| 28.43 | 0.248 | 9.27 | -0.222 | 1.33 | -0.89 | -- | -1.49 | 0.208 | 2.9 | 9.956 | 78 | -- | -- |
| 29.01 | 0.251 | 9.24 | -0.0627 | 1.31 | -0.757 | -- | -- | 0.266 | 2.89 | 21.84 | 70 | -- | -- |
| 91.05 | 0.444 | 9.2 | 0.285 | -- | -1.98 | -- | 0.599 | 0.452 | -- | 23.89 | 28 | -- | -- |
| 37.81 | 0.288 | 9.27 | -0.19 | 1.6 | -- | 0.423 | -- | 0.139 | 2.93 | -- | -- | -- | -- |
| 38.42 | 0.29 | 9.27 | -0.2 | 1.6 | -- | -- | -- | 0.136 | 2.93 | -- | -- | -- | -- |
| 91.06 | 0.444 | 9.21 | 0.167 | -- | -1.96 | -- | -- | 0.403 | -- | 23.98 | 24 | -- | -- |
| 29.02 | 0.251 | 9.24 | -- | 1.3 | -0.763 | -- | -- | 0.268 | 2.87 | 21.77 | 73 | -- | -- |
| 185.58 | 0.637 | 9.26 | -0.132 | -- | -- | -- | -- | 0.178 | -- | -- | -- | -- | -- |
| 39.47 | 0.294 | 9.27 | -- | 1.59 | -- | -- | -- | 0.159 | 2.93 | -- | -- | -- | -- |
| 91.77 | 0.446 | 9.22 | -- | -- | -1.94 | -- | -- | 0.379 | -- | 24.04 | 24 | -- | -- |
| 186.04 | 0.637 | 9.26 | -- | -- | -- | -- | -- | 0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 4 | 25.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 5 | 25.58 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 11 | 25.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 15 | 25.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 18 |
| 81 | 26.91 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 289 | 28.38 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 292 | 28.40 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 293 | 28.41 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 296 | 28.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 305 | 28.45 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 309 | 28.47 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 17 |
| 323 | 28.51 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 20 |
| 341 | 28.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 357 | 28.61 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 19 |
| 365 | 28.63 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 401 | 28.75 | temperature | 10 | 10 | > th | dose dependent | sin | 21 | NA |
| 421 | 28.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 9 |
| 446 | 28.88 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 514 | 29.08 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 530 | 29.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 7 |
| 734 | 29.58 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 743 | 29.61 | radiation | 40 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 759 | 29.65 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 2 | 18 |
| 760 | 29.65 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 19 |
| 786 | 29.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 798 | 29.72 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 803 | 29.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 833 | 29.79 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 920 | 29.94 | radiation | 20 | 270 | < th | dose independent | rect. | 1 | 20 |
| 932 | 29.95 | radiation | 40 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 987 | 30.05 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 17 |