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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0810900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.044) R2 : 0.151
β1 : 0.589 (0.163) R2dD : 0.0264 R2D : -0.00655
β2 : -- (--) R2dC : -- R2C : --
β3 : 14.8 (1.86) R2dE : 1.08 R2E : -1.06
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 73.1 (8.8) R2dD*E : 1.18 R2D*E : -0.963
γ1 : -0.204 (0.093) R2dN8 : 0.0121 R2N8 : 0.00886
σ : 0.813
deviance : 304.75
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_____
C
peak time of C : --
E
wheather : wind
threshold : 5.026
memory length : 219
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.26
open length of G : 5.38

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
304.24 0.82 3 0.667 0.0115 14.8 0.873 73.6 -0.227 16.3 5.099 281 2.2 5.2
349.7 0.878 2.91 0.3 0.142 -0.412 0.328 -- -0.22 7.67 5.099 281 2.2 5.2
305.23 0.814 2.98 0.614 0.0412 14.7 -- 72.6 -0.203 11.4 5 252 2.22 5.34
348.75 0.87 2.88 0.295 0.2 -0.813 -- -- -0.203 8.18 4.7 476 3 6.68
304.75 0.813 2.98 0.589 -- 14.8 -- 73.1 -0.204 -- 5.026 219 2.26 5.38
349.89 0.877 2.91 0.305 0.138 -- 0.343 -- -0.218 7.74 -- -- -- --
350.18 0.876 2.91 0.312 0.143 -- -- -- -0.219 7 -- -- -- --
349.18 0.87 2.92 0.251 -- -0.606 -- -- -0.246 -- 5.181 449 3.57 6.95
349.21 0.87 2.92 -- 0.173 -0.743 -- -- -0.275 7.95 4.997 409 3.42 7.12
351.26 0.876 2.92 0.315 -- -- -- -- -0.216 -- -- -- -- --
352.75 0.879 2.92 -- 0.147 -- -- -- -0.253 6.86 -- -- -- --
350.59 0.872 2.93 -- -- -0.598 -- -- -0.273 -- 5.031 378 3.42 8.13
353.88 0.878 2.93 -- -- -- -- -- -0.251 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 312.55 wind 3.0 270 > th dose dependent rect. 2 4
3 313.26 wind 5.0 270 > th dose independent rect. 2 5
6 314.70 wind 5.0 270 > th dose independent rect. 2 2
13 315.36 wind 3.0 270 > th dose dependent rect. 1 7
19 317.26 temperature 25.0 10 > th dose dependent rect. 9 1
74 327.31 temperature 25.0 30 > th dose independent rect. 9 1
85 328.58 temperature 20.0 90 < th dose independent rect. 6 1
94 329.71 wind 5.0 90 > th dose independent rect. 5 2
95 329.71 wind 5.0 90 > th dose dependent rect. 4 3
98 329.72 wind 5.0 90 > th dose dependent rect. 6 1
100 329.79 radiation 20.0 90 > th dose independent rect. 6 1
114 329.79 radiation 20.0 90 > th dose dependent rect. 6 1
149 331.95 temperature 25.0 30 < th dose dependent rect. 1 10
153 331.98 temperature 20.0 30 < th dose dependent rect. 7 1
170 332.55 atmosphere 1000.0 90 < th dose independent rect. 20 1
171 332.55 atmosphere 1000.0 10 < th dose independent rect. 21 1
183 332.55 atmosphere 1000.0 90 < th dose dependent rect. 20 1
184 332.55 atmosphere 1000.0 10 < th dose dependent rect. 21 1
218 332.92 temperature 25.0 90 > th dose dependent rect. 2 8
219 332.92 wind 9.0 720 < th dose dependent rect. 22 10
247 333.56 atmosphere 1005.0 10 < th dose independent rect. 2 4
261 333.72 wind 1.0 90 < th dose dependent rect. 9 13
278 333.92 atmosphere 1005.0 270 < th dose independent rect. 2 1
280 333.94 precipitation 0.1 90 > th dose independent rect. 5 1
281 333.94 precipitation 0.1 90 > th dose dependent rect. 5 1
285 334.02 radiation 1.0 30 < th dose dependent rect. 7 1
299 334.22 temperature 20.0 30 < th dose independent rect. 1 5
318 334.44 wind 9.0 720 < th dose dependent rect. 20 14
349 334.86 temperature 25.0 30 < th dose dependent rect. 1 18
358 334.95 humidity 80.0 90 < th dose dependent rect. 3 6
413 335.57 wind 5.0 10 > th dose independent rect. 7 1
418 335.59 wind 3.0 720 < th dose independent rect. 22 10
426 335.67 atmosphere 1005.0 4320 > th dose independent rect. 21 1
429 335.72 atmosphere 1005.0 4320 < th dose independent rect. 21 1
430 335.72 wind 5.0 720 < th dose dependent rect. 22 16
439 335.79 atmosphere 1005.0 1440 > th dose independent rect. 24 1
456 335.89 wind 5.0 720 < th dose dependent rect. 22 7
464 335.95 temperature 20.0 270 < th dose dependent rect. 4 3
467 335.98 wind 3.0 270 < th dose dependent rect. 7 1
471 336.01 wind 5.0 720 < th dose dependent rect. 22 3
474 336.03 wind 3.0 90 < th dose independent rect. 7 6
477 336.04 wind 3.0 90 < th dose independent rect. 7 4
504 336.30 wind 5.0 720 < th dose dependent sin 9 NA
511 336.35 wind 1.0 720 > th dose dependent sin 9 NA
512 336.36 wind 3.0 720 < th dose independent rect. 20 14
516 336.39 temperature 20.0 30 < th dose independent rect. 1 18
530 336.44 wind 3.0 720 > th dose independent rect. 19 17
535 336.48 wind 3.0 720 < th dose independent rect. 22 16
562 336.57 wind 3.0 720 < th dose independent rect. 22 3
594 336.70 wind 5.0 1440 < th dose dependent rect. 24 2
602 336.76 wind 3.0 720 < th dose independent rect. 20 18
603 336.76 wind 5.0 720 < th dose dependent rect. 22 5
621 336.84 wind 3.0 90 < th dose independent rect. 7 8
623 336.84 wind 9.0 1440 < th dose dependent rect. 24 2
647 336.96 temperature 20.0 90 > th dose independent rect. 23 17
700 337.14 wind 1.0 720 > th dose dependent rect. 18 18
707 337.16 temperature 25.0 30 < th dose dependent sin 4 NA
710 337.17 temperature 20.0 90 > th dose independent rect. 3 13
738 337.28 wind 3.0 720 > th dose independent sin 9 NA
779 337.44 wind 1.0 90 < th dose dependent rect. 20 1
789 337.46 wind 3.0 720 < th dose independent sin 9 NA
817 337.51 wind 1.0 90 < th dose dependent rect. 17 5
825 337.53 wind 3.0 720 < th dose dependent rect. 20 1
897 337.73 wind 3.0 720 > th dose independent rect. 22 14
937 337.81 temperature 20.0 270 < th dose independent rect. 3 4
946 337.83 atmosphere 1005.0 4320 < th dose independent rect. 18 7
993 337.92 wind 3.0 270 > th dose independent rect. 23 20