Os01g0810800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0810800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, putative npRNA.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.22 | 0.379 | 3.05 | -0.329 | 0.0823 | 0.913 | 0.116 | -8.79 | 0.00125 | 11.5 | 30.5 | 20 | -- | -- |
| 72.25 | 0.399 | 2.99 | 0.236 | 0.0991 | -0.191 | 0.0632 | -- | -0.00666 | 11.4 | 34.1 | 21 | -- | -- |
| 65.21 | 0.376 | 3.04 | -0.306 | 0.0813 | 0.919 | -- | -8.79 | 0.00227 | 11.2 | 30.7 | 19 | -- | -- |
| 70.96 | 0.392 | 2.99 | 0.25 | 0.091 | -0.151 | -- | -- | 0.00396 | 11.8 | 33.8 | 30299 | -- | -- |
| 65.62 | 0.377 | 3.04 | -0.311 | -- | 0.941 | -- | -8.85 | 0.00412 | -- | 30.7 | 19 | -- | -- |
| 72.38 | 0.399 | 2.99 | 0.233 | 0.096 | -- | 0.0566 | -- | -0.00499 | 11.1 | -- | -- | -- | -- |
| 72.39 | 0.398 | 2.99 | 0.235 | 0.0957 | -- | -- | -- | -0.00479 | 11.1 | -- | -- | -- | -- |
| 70.19 | 0.39 | 2.97 | 0.445 | -- | -0.268 | -- | -- | 0.149 | -- | 32.2 | 32300 | -- | -- |
| 73.15 | 0.398 | 2.98 | -- | 0.0901 | -0.113 | -- | -- | 0.0121 | 11 | 32.55 | 28877 | -- | -- |
| 72.96 | 0.399 | 2.99 | 0.233 | -- | -- | -- | -- | -0.0056 | -- | -- | -- | -- | -- |
| 73.85 | 0.402 | 2.99 | -- | 0.0936 | -- | -- | -- | -0.031 | 11 | -- | -- | -- | -- |
| 73.66 | 0.4 | 2.99 | -- | -- | -0.116 | -- | -- | 0.0112 | -- | 32.6 | 28872 | -- | -- |
| 74.4 | 0.403 | 3 | -- | -- | -- | -- | -- | -0.0315 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.40 | wind | 5 | 10 | > th | dose independent | rect. | 10 | 1 |
| 5 | 63.40 | wind | 5 | 10 | > th | dose dependent | rect. | 10 | 1 |
| 9 | 63.44 | humidity | 90 | 90 | > th | dose independent | rect. | 8 | 1 |
| 11 | 63.50 | wind | 7 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 12 | 63.58 | humidity | 90 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 14 | 63.62 | wind | 7 | 90 | > th | dose independent | rect. | 8 | 1 |
| 35 | 64.28 | wind | 9 | 90 | > th | dose dependent | rect. | 22 | 12 |
| 52 | 64.85 | temperature | 30 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 59 | 64.92 | temperature | 30 | 10 | > th | dose independent | rect. | 11 | 1 |
| 95 | 65.20 | temperature | 30 | 90 | > th | dose independent | rect. | 11 | 1 |
| 178 | 65.75 | temperature | 30 | 10 | > th | dose independent | rect. | 16 | 20 |
| 183 | 65.78 | temperature | 30 | 10 | > th | dose dependent | sin | 7 | NA |
| 198 | 66.05 | temperature | 30 | 10 | > th | dose independent | rect. | 14 | 22 |
| 279 | 66.57 | temperature | 30 | 30 | > th | dose independent | sin | 8 | NA |
| 380 | 67.14 | temperature | 30 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 426 | 67.56 | temperature | 30 | 30 | < th | dose independent | sin | 8 | NA |
| 568 | 68.21 | humidity | 70 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 579 | 68.25 | humidity | 70 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 631 | 68.30 | humidity | 70 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 633 | 68.32 | humidity | 70 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 655 | 68.33 | temperature | 30 | 10 | > th | dose dependent | no | NA | NA |
| 776 | 68.39 | wind | 1 | 90 | < th | dose dependent | rect. | 6 | 16 |
| 802 | 68.51 | humidity | 60 | 14400 | > th | dose independent | rect. | 20 | 13 |
| 823 | 68.55 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 13 |
| 836 | 68.58 | humidity | 50 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 848 | 68.62 | humidity | 50 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 855 | 68.64 | humidity | 50 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 860 | 68.64 | humidity | 50 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 862 | 68.65 | humidity | 50 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 895 | 68.70 | humidity | 90 | 4320 | > th | dose independent | rect. | 3 | 2 |
| 925 | 68.77 | humidity | 50 | 14400 | > th | dose independent | sin | 8 | NA |
| 946 | 68.80 | wind | 7 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 956 | 68.83 | humidity | 50 | 14400 | < th | dose independent | sin | 8 | NA |