Os01g0810700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os01g0810700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.77 | 0.384 | 8.5 | -0.704 | 0.975 | 0.812 | 0.152 | 0.33 | -0.143 | 1.99 | 29.8 | 1355 | -- | -- |
| 66.63 | 0.38 | 8.49 | -0.626 | 0.974 | 0.862 | 0.153 | -- | -0.097 | 2 | 29.6 | 1354 | -- | -- |
| 66.69 | 0.38 | 8.49 | -0.722 | 0.971 | 0.81 | -- | 0.393 | -0.112 | 2.02 | 29.63 | 1354 | -- | -- |
| 66.67 | 0.38 | 8.48 | -0.63 | 0.973 | 0.855 | -- | -- | -0.0588 | 1.99 | 29.54 | 1354 | -- | -- |
| 110.38 | 0.489 | 8.44 | -0.621 | -- | 0.991 | -- | -0.126 | 0.0984 | -- | 28.88 | 1741 | -- | -- |
| 104.39 | 0.479 | 8.48 | -0.918 | 0.865 | -- | -0.0482 | -- | -0.0661 | 2 | -- | -- | -- | -- |
| 104.4 | 0.478 | 8.48 | -0.917 | 0.864 | -- | -- | -- | -0.0658 | 1.99 | -- | -- | -- | -- |
| 110.31 | 0.489 | 8.44 | -0.583 | -- | 1.01 | -- | -- | 0.0863 | -- | 28.89 | 1738 | -- | -- |
| 76.56 | 0.408 | 8.46 | -- | 0.967 | 0.951 | -- | -- | 0.007 | 1.99 | 29.5 | 1371 | -- | -- |
| 149.37 | 0.571 | 8.47 | -0.881 | -- | -- | -- | -- | -0.0456 | -- | -- | -- | -- | -- |
| 126.54 | 0.526 | 8.45 | -- | 0.847 | -- | -- | -- | 0.0363 | 1.97 | -- | -- | -- | -- |
| 118.54 | 0.507 | 8.42 | -- | -- | 1.11 | -- | -- | 0.182 | -- | 28.68 | 1729 | -- | -- |
| 169.83 | 0.608 | 8.45 | -- | -- | -- | -- | -- | 0.0521 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.16 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 2 | 66.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 8 | 66.89 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 12 | 66.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 28 | 67.12 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 39 | 67.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 48 | 67.26 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 53 | 67.30 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 57 | 67.33 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 64 | 67.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 80 | 67.49 | temperature | 25 | 1440 | > th | dose dependent | sin | 23 | NA |
| 99 | 67.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 22 |
| 137 | 67.76 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 151 | 67.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 15 |
| 154 | 67.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 155 | 67.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 22 |
| 164 | 67.81 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 165 | 67.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 168 | 67.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 170 | 67.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 18 |
| 174 | 67.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 19 |
| 189 | 67.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 192 | 67.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 8 |
| 194 | 67.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 195 | 67.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 202 | 67.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 221 | 67.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 241 | 67.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 270 | 67.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 6 |
| 273 | 67.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 12 |
| 293 | 67.87 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 298 | 67.89 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 317 | 67.92 | temperature | 30 | 1440 | < th | dose independent | sin | 21 | NA |
| 320 | 67.92 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 328 | 67.93 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 359 | 67.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 8 |
| 374 | 68.00 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 499 | 68.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 506 | 68.22 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 507 | 68.22 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 627 | 68.31 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 635 | 68.32 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 12 |
| 644 | 68.34 | temperature | 30 | 1440 | > th | dose independent | sin | 19 | NA |
| 677 | 68.38 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 679 | 68.38 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 684 | 68.39 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 847 | 68.59 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 899 | 68.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 934 | 68.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 935 | 68.84 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 2 |