Os01g0810200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupin, RmlC-type domain containing protein.
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Os01g0810200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupin, RmlC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 187.39 | 0.643 | 4.78 | 0.244 | 2.91 | 3.21 | -0.283 | 0.0465 | 0.187 | 11.7 | 7.558 | 237 | 7.25 | 18.1 |
| 187.19 | 0.637 | 4.78 | 0.253 | 2.9 | 3.19 | -0.248 | -- | 0.19 | 11.7 | 7.346 | 230 | 7.27 | 18.2 |
| 187.54 | 0.638 | 4.78 | 0.245 | 2.92 | 3.24 | -- | 0.103 | 0.183 | 11.7 | 7.075 | 231 | 7.27 | 18.2 |
| 187.43 | 0.638 | 4.78 | 0.25 | 2.91 | 3.15 | -- | -- | 0.19 | 11.8 | 6.954 | 228 | 7.27 | 18.2 |
| 462.74 | 1.01 | 4.91 | -0.26 | -- | 4.37 | -- | -0.77 | -0.115 | -- | 17.53 | 7 | 7.84 | 18.1 |
| 287.14 | 0.794 | 4.79 | 0.62 | 3.8 | -- | 0.121 | -- | 0.322 | 14.2 | -- | -- | -- | -- |
| 287.19 | 0.794 | 4.79 | 0.623 | 3.8 | -- | -- | -- | 0.322 | 14.2 | -- | -- | -- | -- |
| 455.21 | 0.998 | 4.87 | -0.181 | -- | 4.33 | -- | -- | 0.0489 | -- | 17.89 | 8 | 7.3 | 17.6 |
| 188.91 | 0.64 | 4.79 | -- | 2.89 | 3.2 | -- | -- | 0.156 | 11.8 | 7.671 | 223 | 7.31 | 18.3 |
| 1150.01 | 1.58 | 4.83 | 0.464 | -- | -- | -- | -- | 0.231 | -- | -- | -- | -- | -- |
| 297.44 | 0.807 | 4.81 | -- | 3.79 | -- | -- | -- | 0.253 | 14.2 | -- | -- | -- | -- |
| 445.16 | 0.983 | 4.87 | -- | -- | 4.32 | -- | -- | 0.0053 | -- | 17.29 | 14 | 7.85 | 17 |
| 1155.69 | 1.59 | 4.84 | -- | -- | -- | -- | -- | 0.179 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.37 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 2 | 193.28 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 4 | 17 |
| 7 | 195.98 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 82 | 207.86 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 9 |
| 130 | 213.31 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 17 |
| 142 | 214.38 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 156 | 215.08 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 16 |
| 159 | 215.21 | radiation | 1.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 160 | 215.21 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 16 |
| 190 | 216.62 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 192 | 216.75 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 204 | 217.02 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 210 | 217.30 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 20 |
| 282 | 219.98 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 317 | 221.16 | temperature | 20.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 323 | 221.38 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 19 |
| 324 | 221.46 | temperature | 30.0 | 10 | < th | dose dependent | sin | 23 | NA |
| 350 | 222.33 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 353 | 222.38 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 15 |
| 360 | 222.56 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 490 | 225.59 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 497 | 225.71 | humidity | 70.0 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 499 | 225.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 500 | 225.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 511 | 225.97 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 9 |
| 512 | 225.99 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 6 |
| 521 | 226.14 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 4 |
| 568 | 226.85 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 19 |
| 571 | 226.85 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 601 | 227.35 | temperature | 10.0 | 10 | > th | dose dependent | sin | 0 | NA |
| 702 | 228.57 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 703 | 228.57 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 734 | 228.98 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 9 |
| 754 | 229.16 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 20 | 6 |
| 755 | 229.16 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 756 | 229.16 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 20 | 6 |
| 766 | 229.23 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 777 | 229.32 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 9 |
| 783 | 229.40 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 785 | 229.40 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 795 | 229.47 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 799 | 229.51 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 800 | 229.51 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 802 | 229.51 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 803 | 229.51 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 806 | 229.51 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 807 | 229.51 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 808 | 229.51 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 860 | 229.86 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 19 |
| 896 | 230.15 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 897 | 230.15 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 899 | 230.15 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 900 | 230.15 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 902 | 230.15 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 5 |
| 903 | 230.15 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 904 | 230.15 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 928 | 230.28 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 960 | 230.50 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 4 |
| 961 | 230.50 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 4 |
| 972 | 230.67 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 4 | 8 |
| 982 | 230.72 | temperature | 15.0 | 270 | > th | dose independent | rect. | 21 | 14 |