Os01g0809300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os01g0809300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.77 | 0.192 | 14.1 | -0.0915 | 0.824 | -0.322 | 0.225 | 0.81 | 0.286 | 3.15 | 1.13 | 1239 | -- | -- |
| 17.75 | 0.196 | 14 | -0.0501 | 0.802 | -0.22 | 0.164 | -- | 0.278 | 3.11 | 1.2 | 1967 | -- | -- |
| 16.93 | 0.192 | 14.1 | -0.0959 | 0.825 | -0.321 | -- | 0.818 | 0.284 | 3.14 | 1.106 | 1239 | -- | -- |
| 17.85 | 0.197 | 14 | -0.0527 | 0.8 | -0.226 | -- | -- | 0.281 | 3.1 | 1.18 | 1863 | -- | -- |
| 49.79 | 0.33 | 14.1 | -0.0412 | -- | -0.449 | -- | 0.592 | 0.255 | -- | 1.106 | 1239 | -- | -- |
| 18.66 | 0.203 | 14.1 | 0.0173 | 0.816 | -- | 0.236 | -- | 0.229 | 3.23 | -- | -- | -- | -- |
| 18.84 | 0.203 | 14.1 | 0.0126 | 0.817 | -- | -- | -- | 0.228 | 3.23 | -- | -- | -- | -- |
| 45.56 | 0.316 | 14.1 | -0.105 | -- | -0.365 | -- | -- | 0.246 | -- | 2.399 | 3166 | -- | -- |
| 17.92 | 0.197 | 14 | -- | 0.797 | -0.209 | -- | -- | 0.28 | 3.09 | 1.2 | 1863 | -- | -- |
| 56.69 | 0.352 | 14.1 | 0.0473 | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
| 18.85 | 0.203 | 14.1 | -- | 0.817 | -- | -- | -- | 0.226 | 3.23 | -- | -- | -- | -- |
| 45.84 | 0.316 | 14.1 | -- | -- | -0.352 | -- | -- | 0.257 | -- | 2.399 | 3166 | -- | -- |
| 56.75 | 0.352 | 14.1 | -- | -- | -- | -- | -- | 0.244 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 14 |
| 6 | 15.78 | temperature | 15 | 90 | > th | dose dependent | sin | 12 | NA |
| 10 | 15.81 | temperature | 15 | 10 | > th | dose dependent | sin | 11 | NA |
| 24 | 15.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 9 |
| 30 | 15.95 | temperature | 30 | 10 | < th | dose dependent | sin | 11 | NA |
| 31 | 15.95 | temperature | 30 | 90 | < th | dose dependent | sin | 12 | NA |
| 107 | 16.13 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 16 |
| 125 | 16.16 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 6 |
| 132 | 16.17 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 11 |
| 268 | 16.33 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 15 |
| 345 | 16.39 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 403 | 16.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 441 | 16.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 480 | 16.49 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 8 |
| 487 | 16.50 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 6 |
| 521 | 16.52 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 10 |
| 526 | 16.53 | temperature | 20 | 10 | < th | dose independent | rect. | 22 | 7 |
| 543 | 16.55 | temperature | 20 | 30 | > th | dose independent | sin | 11 | NA |
| 563 | 16.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 8 |
| 608 | 16.59 | temperature | 20 | 90 | < th | dose independent | sin | 11 | NA |
| 610 | 16.59 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 9 |
| 614 | 16.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 1 |
| 709 | 16.63 | temperature | 20 | 10 | < th | dose independent | sin | 11 | NA |
| 766 | 16.65 | humidity | 60 | 43200 | < th | dose dependent | rect. | 1 | 8 |