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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0808400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Calcium-dependent protein kinase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.4 (0.0295) R2 : 0.242
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.41 (0.12) R2dE : 0.241 R2E : 0.242
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00668 (0.0631) R2dN8 : 2.5e-05 R2N8 : 0.00087
σ : 0.552
deviance : 140.66
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1001
memory length : 6459
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.3 0.517 3.37 0.389 0.174 1.1 0.272 4.28 0.000741 11.4 999.9 5976 -- --
136.12 0.543 3.39 0.287 0.173 1.36 0.273 -- 0.0195 11 1001 6469 -- --
121.5 0.513 3.37 0.399 0.176 1.13 -- 4.41 0.00256 10.5 999.8 5957 -- --
136.36 0.544 3.39 0.3 0.181 1.37 -- -- 0.0221 10.2 1001 6469 -- --
123.47 0.518 3.37 0.396 -- 1.15 -- 4.42 0.000212 -- 999.7 5943 -- --
175.63 0.621 3.42 0.453 0.188 -- 0.253 -- -0.102 11 -- -- -- --
175.82 0.621 3.42 0.462 0.192 -- -- -- -0.102 10.2 -- -- -- --
138.35 0.548 3.4 0.299 -- 1.37 -- -- 0.0196 -- 1001 6513 -- --
138.71 0.549 3.4 -- 0.18 1.42 -- -- -0.00146 10 1001 6410 -- --
178.06 0.624 3.43 0.459 -- -- -- -- -0.102 -- -- -- -- --
181.44 0.63 3.43 -- 0.19 -- -- -- -0.153 10.1 -- -- -- --
140.66 0.552 3.4 -- -- 1.41 -- -- -0.00668 -- 1001 6459 -- --
183.62 0.632 3.44 -- -- -- -- -- -0.153 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 113.37 wind 5 4320 > th dose dependent rect. 20 3
6 115.58 wind 7 4320 < th dose independent rect. 18 7
10 115.88 wind 7 4320 < th dose independent rect. 19 3
13 116.14 wind 7 4320 > th dose independent rect. 18 4
18 116.34 wind 7 4320 > th dose independent rect. 18 7
27 116.66 wind 7 4320 > th dose dependent rect. 18 8
148 120.17 humidity 90 1440 < th dose dependent rect. 3 1
168 122.91 humidity 90 1440 < th dose dependent rect. 23 8
169 123.38 atmosphere 995 14400 < th dose independent rect. 17 1
170 123.38 atmosphere 995 14400 < th dose dependent rect. 17 1
196 124.01 atmosphere 995 14400 > th dose independent rect. 17 1
205 124.56 humidity 90 1440 < th dose independent rect. 2 1
211 124.97 humidity 90 1440 < th dose dependent rect. 2 5
212 125.02 humidity 90 1440 < th dose independent rect. 24 7
218 125.25 humidity 90 1440 < th dose dependent rect. 23 5
223 125.52 humidity 50 1440 > th dose dependent rect. 24 7
239 125.63 atmosphere 995 14400 > th dose independent rect. 8 11
240 125.63 humidity 70 1440 > th dose dependent rect. 3 1
243 125.66 atmosphere 995 14400 > th dose independent rect. 12 7
270 125.82 atmosphere 995 14400 > th dose independent rect. 18 22
272 125.83 atmosphere 995 14400 > th dose independent sin 4 NA
281 125.87 atmosphere 995 14400 > th dose independent rect. 22 19
283 125.87 atmosphere 995 14400 < th dose independent rect. 21 20
287 125.88 atmosphere 995 14400 > th dose independent rect. 23 17
296 125.90 atmosphere 995 14400 < th dose independent sin 4 NA
306 125.95 atmosphere 995 14400 < th dose dependent rect. 14 1
333 126.04 atmosphere 995 14400 > th dose independent rect. 3 12
339 126.05 atmosphere 995 14400 < th dose dependent rect. 3 15
346 126.06 atmosphere 995 14400 < th dose dependent rect. 14 11
354 126.06 atmosphere 995 14400 < th dose dependent rect. 3 19
369 126.07 atmosphere 995 14400 < th dose dependent sin 1 NA
382 126.09 atmosphere 995 14400 < th dose dependent sin 18 NA
436 126.15 atmosphere 995 14400 > th dose independent no NA NA
440 126.15 atmosphere 995 14400 > th dose independent rect. 8 22
443 126.15 atmosphere 995 14400 > th dose independent rect. 10 23
445 126.15 atmosphere 995 14400 > th dose independent rect. 14 23
449 126.16 atmosphere 995 14400 > th dose independent rect. 10 20
457 126.16 atmosphere 995 14400 > th dose independent rect. 4 23
551 126.21 atmosphere 995 14400 > th dose independent rect. 14 19
558 126.22 atmosphere 995 14400 > th dose independent rect. 14 16
572 126.23 atmosphere 995 14400 < th dose independent no NA NA
574 126.23 atmosphere 995 14400 < th dose independent rect. 14 16
677 126.26 atmosphere 995 14400 < th dose independent rect. 1 23
833 126.39 atmosphere 995 14400 > th dose independent rect. 10 14
917 126.46 atmosphere 995 14400 > th dose independent sin 16 NA
955 126.52 atmosphere 995 14400 < th dose independent sin 16 NA
995 126.64 humidity 80 1440 < th dose independent rect. 22 1