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Os01g0808100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcription factor HBP-1b(c1) (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.95 (0.0262) R2 : 0.851
β1 : 2.24 (0.0959) R2dD : 0.185 R2D : 0.16
β2 : 1.22 (0.113) R2dC : 0.121 R2C : 0.41
β3 : 1.33 (0.0861) R2dE : 0.251 R2E : 0.529
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.502 (0.0561) R2dN8 : 0.0354 R2N8 : -0.00249
σ : 0.489
deviance : 110.37
__
_____
C
peak time of C : 1.9
E
wheather : radiation
threshold : 2.65
memory length : 51
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
110.27 0.493 9.95 2.22 1.25 1.32 -0.599 0.408 0.487 2.01 2.471 44 -- --
110.34 0.489 9.95 2.22 1.28 1.29 -0.155 -- 0.503 1.86 2.595 50 -- --
110.45 0.489 9.94 2.24 1.15 1.4 -- 0.0465 0.502 2 2.753 51 -- --
110.37 0.489 9.95 2.24 1.22 1.33 -- -- 0.502 1.9 2.65 51 -- --
132.83 0.537 9.93 2.17 -- 2.19 -- -0.338 0.507 -- 3.25 76 -- --
141.37 0.557 9.99 2.19 2.71 -- 0.0547 -- 0.431 0.886 -- -- -- --
141.39 0.557 9.99 2.19 2.71 -- -- -- 0.431 0.887 -- -- -- --
130.41 0.532 9.92 2.28 -- 2.18 -- -- 0.599 -- 3.078 94 -- --
240.11 0.722 9.99 -- 1.35 1.27 -- -- 0.285 1.86 4.12 51 -- --
597.91 1.14 9.95 2.29 -- -- -- -- 0.482 -- -- -- -- --
267.32 0.765 10 -- 2.74 -- -- -- 0.188 0.922 -- -- -- --
264.55 0.758 9.98 -- -- 2.18 -- -- 0.354 -- 4.078 85 -- --
735.74 1.27 10 -- -- -- -- -- 0.228 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 106.91 temperature 15.0 30 > th dose dependent rect. 5 13
13 110.38 radiation 1.0 30 < th dose dependent sin 0 NA
16 110.98 temperature 10.0 720 > th dose dependent rect. 5 2
19 111.41 wind 9.0 720 < th dose independent rect. 7 14
21 111.72 wind 9.0 720 < th dose independent rect. 9 10
25 112.49 radiation 1.0 30 > th dose independent rect. 5 13
37 112.75 wind 9.0 720 < th dose independent rect. 7 22
38 112.79 radiation 1.0 30 > th dose independent sin 0 NA
39 112.89 radiation 1.0 30 > th dose independent rect. 17 23
42 113.01 radiation 1.0 30 < th dose independent rect. 7 23
43 113.04 radiation 1.0 30 > th dose independent no NA NA
44 113.04 radiation 1.0 30 < th dose independent no NA NA
66 113.04 radiation 1.0 30 < th dose independent rect. 13 19
115 113.04 radiation 1.0 30 < th dose independent rect. 15 23
116 113.09 radiation 1.0 30 < th dose independent rect. 17 23
117 113.21 radiation 1.0 30 < th dose dependent rect. 2 19
132 113.73 radiation 1.0 30 < th dose independent rect. 15 17
144 113.77 radiation 1.0 30 < th dose independent sin 0 NA
145 113.78 radiation 1.0 30 < th dose independent rect. 2 19
156 113.84 radiation 1.0 90 < th dose independent rect. 23 23
159 113.90 radiation 1.0 4320 < th dose dependent rect. 3 2
162 113.97 radiation 1.0 30 < th dose dependent no NA NA
163 113.97 radiation 1.0 30 < th dose dependent rect. 13 19
178 113.97 radiation 1.0 30 < th dose dependent rect. 15 23
179 113.99 radiation 1.0 30 < th dose dependent rect. 7 23
180 114.03 radiation 1.0 30 < th dose dependent rect. 17 23
181 114.06 wind 9.0 720 < th dose independent rect. 24 19
193 114.61 radiation 1.0 720 < th dose dependent rect. 24 19
196 114.69 radiation 1.0 30 < th dose dependent rect. 15 17
222 114.93 radiation 1.0 30 < th dose dependent rect. 24 22
223 114.94 radiation 1.0 4320 > th dose independent rect. 17 13
243 115.28 radiation 20.0 720 < th dose independent rect. 21 10
248 115.43 radiation 1.0 30 < th dose independent rect. 15 15
255 115.57 wind 7.0 720 < th dose independent rect. 7 5
260 115.68 radiation 40.0 720 < th dose independent rect. 19 14
264 115.72 temperature 20.0 720 > th dose independent rect. 5 2
273 115.86 radiation 1.0 4320 < th dose independent rect. 18 12
283 116.06 radiation 1.0 4320 < th dose dependent rect. 19 10
286 116.13 wind 9.0 720 < th dose independent rect. 15 14
305 116.31 precipitation 0.1 720 < th dose independent rect. 21 10
306 116.31 precipitation 0.1 720 < th dose dependent rect. 21 10
319 116.48 atmosphere 1015.0 720 < th dose independent rect. 7 14
324 116.53 radiation 1.0 4320 > th dose independent rect. 17 2
343 116.57 radiation 1.0 720 < th dose dependent rect. 23 7
344 116.58 temperature 20.0 10 > th dose dependent rect. 21 21
411 116.65 humidity 70.0 720 > th dose independent rect. 21 10
447 116.93 radiation 1.0 14400 < th dose independent rect. 18 4
468 117.06 radiation 1.0 14400 < th dose independent rect. 18 10
476 117.08 temperature 20.0 90 > th dose independent rect. 5 12
482 117.14 radiation 1.0 720 < th dose dependent rect. 24 16
495 117.26 temperature 20.0 10 > th dose dependent rect. 5 21
507 117.38 radiation 20.0 720 < th dose independent rect. 5 2
512 117.41 temperature 10.0 720 > th dose independent rect. 21 10
513 117.41 temperature 30.0 720 < th dose independent rect. 21 10
514 117.41 humidity 50.0 720 > th dose independent rect. 21 10
516 117.41 atmosphere 995.0 720 > th dose independent rect. 21 10
518 117.41 temperature 10.0 720 > th dose independent rect. 7 14
522 117.42 wind 9.0 720 < th dose independent rect. 16 3
537 117.48 temperature 10.0 90 > th dose dependent rect. 5 21
557 117.65 radiation 30.0 720 < th dose dependent rect. 17 2
572 117.69 temperature 10.0 720 > th dose independent rect. 9 10
573 117.69 atmosphere 1015.0 720 < th dose independent rect. 9 10
574 117.69 temperature 10.0 720 > th dose independent rect. 19 14
575 117.69 humidity 50.0 720 > th dose independent rect. 19 14
576 117.69 atmosphere 995.0 720 > th dose independent rect. 19 14
587 117.73 precipitation 0.1 720 < th dose independent rect. 19 14
590 117.73 precipitation 0.1 720 < th dose dependent rect. 19 14
610 117.87 radiation 1.0 720 > th dose independent rect. 12 4
644 118.00 radiation 1.0 4320 < th dose dependent rect. 17 13
649 118.02 wind 9.0 720 < th dose independent rect. 17 18
693 118.18 precipitation 0.1 720 < th dose independent rect. 3 14
695 118.18 precipitation 0.1 720 < th dose dependent rect. 3 14
804 118.36 wind 9.0 720 < th dose independent rect. 21 10
814 118.42 wind 7.0 720 < th dose independent rect. 24 11
819 118.43 precipitation 0.1 43200 < th dose independent rect. 23 1
820 118.43 precipitation 0.1 43200 < th dose dependent rect. 23 1
825 118.45 precipitation 0.1 720 < th dose independent rect. 19 21
827 118.45 precipitation 0.1 720 < th dose dependent rect. 19 21
834 118.51 wind 7.0 90 < th dose independent rect. 17 12
844 118.55 precipitation 0.1 43200 > th dose independent rect. 23 1
845 118.55 precipitation 0.1 43200 > th dose dependent rect. 23 1
849 118.60 temperature 30.0 10 < th dose dependent rect. 2 19
851 118.64 humidity 70.0 720 > th dose independent rect. 5 2
854 118.64 temperature 30.0 270 < th dose dependent rect. 24 19
857 118.65 precipitation 0.1 720 < th dose independent rect. 5 2
859 118.65 precipitation 0.1 720 < th dose dependent rect. 5 2
863 118.68 precipitation 0.1 270 < th dose independent rect. 19 12
864 118.68 precipitation 0.1 270 < th dose dependent rect. 19 12
868 118.70 radiation 20.0 720 < th dose independent rect. 17 2
881 118.74 wind 1.0 43200 < th dose independent rect. 5 2
896 118.79 wind 9.0 720 < th dose independent rect. 17 10
909 118.90 wind 9.0 720 < th dose independent rect. 19 14
922 118.95 precipitation 0.1 720 < th dose independent rect. 5 10
923 118.95 precipitation 0.1 720 < th dose dependent rect. 5 10
926 118.99 wind 7.0 720 < th dose independent rect. 23 13
931 119.03 radiation 40.0 720 < th dose dependent rect. 21 10
943 119.06 wind 7.0 43200 < th dose dependent rect. 15 1
945 119.07 radiation 1.0 4320 > th dose independent sin 13 NA
983 119.22 temperature 10.0 720 > th dose independent rect. 17 2
984 119.22 atmosphere 1015.0 720 < th dose independent rect. 17 2
989 119.22 temperature 10.0 720 > th dose independent rect. 19 22
1000 119.25 wind 1.0 43200 > th dose independent rect. 5 1