Os01g0805000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein L34 family protein.
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Os01g0805000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein L34 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.17 | 0.421 | 13.5 | 0.0606 | 1.71 | 0.638 | 0.12 | 2.74 | -0.543 | 22.3 | 31.67 | 270 | -- | -- |
| 84.8 | 0.429 | 13.5 | 0.0214 | 1.67 | 0.596 | -0.399 | -- | -0.534 | 22.6 | 24.45 | 390 | -- | -- |
| 80.22 | 0.417 | 13.5 | 0.0582 | 1.71 | 0.624 | -- | 2.69 | -0.545 | 22.3 | 32.2 | 269 | -- | -- |
| 85.22 | 0.43 | 13.5 | 0.00223 | 1.67 | 0.627 | -- | -- | -0.567 | 22.6 | 20 | 394 | -- | -- |
| 191.74 | 0.645 | 13.5 | 0.0483 | -- | 1.25 | -- | 1.12 | -0.669 | -- | 25.07 | 958 | -- | -- |
| 90.51 | 0.446 | 13.5 | 0.0274 | 1.65 | -- | -0.314 | -- | -0.512 | 21.9 | -- | -- | -- | -- |
| 90.89 | 0.446 | 13.5 | 0.0396 | 1.65 | -- | -- | -- | -0.511 | 21.9 | -- | -- | -- | -- |
| 166.9 | 0.602 | 13.5 | -0.0866 | -- | 1.57 | -- | -- | -0.711 | -- | -2.68e-06 | 1025 | -- | -- |
| 85.22 | 0.43 | 13.5 | -- | 1.67 | 0.619 | -- | -- | -0.567 | 22.6 | 20 | 394 | -- | -- |
| 253.94 | 0.745 | 13.4 | 0.0579 | -- | -- | -- | -- | -0.511 | -- | -- | -- | -- | -- |
| 90.93 | 0.446 | 13.5 | -- | 1.65 | -- | -- | -- | -0.516 | 21.9 | -- | -- | -- | -- |
| 166.91 | 0.602 | 13.5 | -- | -- | 1.6 | -- | -- | -0.735 | -- | -17.49 | 1029 | -- | -- |
| 254.03 | 0.744 | 13.4 | -- | -- | -- | -- | -- | -0.518 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.28 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 3 | 71.43 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 8 |
| 5 | 71.86 | temperature | 20.0 | 90 | < th | dose independent | rect. | 1 | 12 |
| 9 | 72.00 | temperature | 20.0 | 90 | < th | dose independent | rect. | 3 | 10 |
| 16 | 72.34 | temperature | 20.0 | 90 | < th | dose independent | sin | 4 | NA |
| 19 | 72.45 | temperature | 20.0 | 90 | > th | dose independent | sin | 3 | NA |
| 34 | 73.38 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 6 | 7 |
| 60 | 74.24 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 81 | 74.60 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 126 | 75.03 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 152 | 75.21 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 17 |
| 170 | 75.28 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 184 | 75.35 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 24 | 10 |
| 202 | 75.46 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 209 | 75.50 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 222 | 75.59 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 232 | 75.62 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 23 | 19 |
| 236 | 75.64 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 17 |
| 255 | 75.71 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 22 | 22 |
| 257 | 75.71 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 14 | 15 |
| 275 | 75.78 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 277 | 75.78 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 15 | NA |
| 297 | 75.85 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 311 | 75.90 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 317 | 75.92 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 341 | 75.97 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 19 | 20 |
| 352 | 76.01 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 16 |
| 359 | 76.02 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 372 | 76.04 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 377 | 76.05 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 17 |
| 381 | 76.06 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 388 | 76.07 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 5 | 18 |
| 430 | 76.18 | humidity | 90.0 | 14400 | > th | dose independent | sin | 0 | NA |
| 433 | 76.18 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 1 | 14 |
| 466 | 76.24 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 5 | 17 |
| 469 | 76.24 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 3 |
| 474 | 76.25 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 476 | 76.25 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 20 |
| 477 | 76.25 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 3 |
| 480 | 76.26 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 484 | 76.26 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 502 | 76.29 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 515 | 76.31 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 532 | 76.34 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 8 |
| 535 | 76.34 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 561 | 76.38 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 610 | 76.44 | humidity | 90.0 | 14400 | < th | dose independent | sin | 0 | NA |
| 632 | 76.47 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 638 | 76.47 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 670 | 76.52 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 673 | 76.52 | temperature | 20.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 675 | 76.52 | humidity | 70.0 | 43200 | > th | dose dependent | sin | 6 | NA |
| 728 | 76.60 | humidity | 80.0 | 43200 | > th | dose independent | sin | 4 | NA |
| 851 | 76.76 | wind | 5.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 852 | 76.76 | wind | 5.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 894 | 76.81 | humidity | 80.0 | 43200 | > th | dose independent | no | NA | NA |
| 971 | 76.92 | wind | 5.0 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 990 | 76.94 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 2 | 10 |