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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0803800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.79 (0.0398) R2 : 0.492
β1 : 1.35 (0.157) R2dD : 0.105 R2D : -0.143
β2 : 1.31 (0.103) R2dC : 0.186 R2C : 0.103
β3 : 1.53 (0.157) R2dE : 0.131 R2E : -0.146
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.35 (0.0881) R2dN8 : 0.381 R2N8 : 0.149
σ : 0.736
deviance : 249.85
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_____
C
peak time of C : 6.29
E
wheather : wind
threshold : 6.346
memory length : 3337
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17.1
open length of G : 2.42

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
244.67 0.735 4.76 1.19 1.28 0.811 -0.986 -2.62 1.32 6.04 6.663 3736 17.1 2.37
248.2 0.734 4.8 1.3 1.32 1.39 -1.06 -- 1.31 6.05 6.583 3289 17.1 2.45
246.46 0.731 4.77 1.21 1.3 0.897 -- -2.47 1.33 6.21 6.399 3518 17.2 2.35
249.85 0.736 4.79 1.35 1.31 1.53 -- -- 1.35 6.29 6.346 3337 17.1 2.42
329.92 0.846 4.77 1.19 -- 1.06 -- -2.29 1.4 -- 6.129 2385 17.4 2.19
295.73 0.806 4.87 0.771 1.31 -- -1.74 -- 1.07 5.51 -- -- -- --
301.24 0.813 4.86 0.769 1.32 -- -- -- 1.07 6.02 -- -- -- --
331.92 0.849 4.81 1.33 -- 1.64 -- -- 1.35 -- 5.554 2351 17.8 1.8
288.32 0.791 4.83 -- 1.31 1.19 -- -- 1.21 6.14 6.335 2272 17.7 2.53
391.53 0.925 4.89 0.808 -- -- -- -- 1.1 -- -- -- -- --
316.84 0.833 4.88 -- 1.33 -- -- -- 0.989 5.99 -- -- -- --
330.87 0.847 4.93 -- -- 1.73 -- -- 0.733 -- -1.929 2041 0.467 3.2
408.75 0.944 4.91 -- -- -- -- -- 1.01 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 246.67 temperature 20.0 720 > th dose independent rect. 19 10
3 247.85 temperature 20.0 720 > th dose independent rect. 19 12
5 248.80 wind 7.0 4320 > th dose independent rect. 17 3
11 249.49 radiation 20.0 43200 < th dose independent rect. 19 11
12 249.65 radiation 30.0 43200 < th dose independent rect. 17 11
13 249.72 wind 7.0 4320 < th dose independent rect. 17 3
14 250.05 wind 7.0 4320 > th dose dependent rect. 17 2
25 250.60 wind 9.0 4320 < th dose independent rect. 17 1
49 251.51 temperature 20.0 720 < th dose independent rect. 22 8
50 251.51 wind 7.0 4320 > th dose dependent rect. 15 5
56 251.84 wind 7.0 4320 > th dose independent rect. 15 7
68 252.33 temperature 20.0 720 > th dose independent rect. 1 6
73 252.48 wind 7.0 4320 < th dose independent rect. 15 7
85 252.95 wind 1.0 270 > th dose independent rect. 23 11
94 253.27 temperature 20.0 720 > th dose independent sin 13 NA
99 253.30 temperature 20.0 720 > th dose independent rect. 12 19
133 253.96 wind 7.0 4320 > th dose independent rect. 15 16
145 254.05 humidity 50.0 720 > th dose dependent rect. 19 3
148 254.11 temperature 20.0 720 > th dose independent rect. 3 1
174 254.52 temperature 20.0 720 < th dose independent sin 10 NA
187 254.66 wind 7.0 4320 > th dose dependent rect. 15 16
199 254.80 wind 7.0 4320 < th dose independent rect. 15 16
211 254.87 radiation 20.0 1440 < th dose dependent rect. 11 2
240 255.19 radiation 10.0 4320 < th dose dependent rect. 19 10
272 255.57 radiation 20.0 43200 < th dose independent rect. 22 8
282 255.69 wind 7.0 4320 > th dose independent sin 15 NA
287 255.74 wind 1.0 270 > th dose independent sin 7 NA
337 256.29 wind 7.0 4320 < th dose independent sin 15 NA
345 256.48 temperature 20.0 720 > th dose independent sin 10 NA
353 256.55 radiation 20.0 43200 < th dose independent rect. 24 6
365 256.68 wind 1.0 720 > th dose dependent rect. 1 6
376 256.86 wind 1.0 720 > th dose dependent rect. 1 4
415 257.22 wind 7.0 720 < th dose independent rect. 16 18
417 257.24 radiation 30.0 43200 < th dose independent rect. 17 9
508 258.03 wind 7.0 4320 > th dose dependent sin 14 NA
516 258.13 humidity 60.0 14400 > th dose independent rect. 20 12
517 258.13 temperature 20.0 720 > th dose independent rect. 19 16
521 258.14 temperature 20.0 720 > th dose independent rect. 19 18
543 258.25 humidity 70.0 14400 < th dose dependent rect. 21 1
563 258.31 humidity 70.0 14400 > th dose independent rect. 21 9
614 258.75 wind 9.0 720 < th dose independent rect. 13 6
623 258.81 temperature 10.0 720 > th dose dependent rect. 19 10
654 259.17 radiation 20.0 720 < th dose independent rect. 1 6
657 259.21 radiation 1.0 1440 < th dose dependent rect. 9 7
663 259.29 temperature 10.0 720 > th dose dependent rect. 1 6
675 259.38 radiation 20.0 1440 < th dose independent rect. 11 2
698 259.60 wind 7.0 720 < th dose independent rect. 17 8
706 259.66 humidity 60.0 14400 > th dose independent rect. 24 8
712 259.72 wind 9.0 43200 > th dose dependent rect. 14 3
749 260.04 radiation 1.0 1440 < th dose independent rect. 9 4
751 260.04 radiation 1.0 1440 < th dose dependent rect. 9 4
756 260.05 temperature 30.0 270 < th dose dependent rect. 23 12
759 260.09 radiation 10.0 720 < th dose independent rect. 13 18
774 260.19 temperature 15.0 720 > th dose dependent rect. 19 5
791 260.26 radiation 1.0 1440 < th dose independent rect. 11 1
793 260.26 radiation 1.0 1440 < th dose dependent rect. 11 1
806 260.33 radiation 10.0 720 < th dose independent rect. 14 8
809 260.35 humidity 70.0 14400 > th dose independent rect. 21 7
825 260.41 wind 9.0 43200 < th dose independent rect. 12 1
828 260.42 radiation 20.0 720 < th dose dependent rect. 14 8
832 260.44 radiation 10.0 720 < th dose independent rect. 11 20
836 260.47 radiation 20.0 4320 < th dose independent rect. 17 13
857 260.60 temperature 10.0 270 > th dose dependent sin 9 NA
862 260.65 humidity 70.0 720 > th dose independent rect. 19 12
878 260.74 humidity 70.0 720 > th dose independent rect. 19 3
894 260.85 wind 9.0 43200 > th dose independent rect. 14 3
895 260.85 humidity 80.0 4320 < th dose independent rect. 6 3
900 260.91 radiation 10.0 1440 > th dose independent rect. 11 2
910 260.96 radiation 20.0 720 < th dose dependent rect. 11 20
911 260.97 wind 9.0 720 < th dose independent rect. 7 18
926 261.07 wind 9.0 14400 < th dose independent rect. 21 7
937 261.21 wind 5.0 4320 < th dose independent rect. 21 1
949 261.29 precipitation 0.1 720 < th dose independent rect. 7 18
953 261.29 precipitation 0.1 720 < th dose dependent rect. 7 18
970 261.36 precipitation 0.1 720 < th dose independent rect. 17 14
973 261.36 precipitation 0.1 720 < th dose dependent rect. 17 14
989 261.44 temperature 10.0 720 > th dose dependent rect. 3 4
993 261.46 humidity 70.0 720 > th dose independent rect. 1 6