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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0803600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.35 (0.0411) R2 : 0.527
β1 : 0.876 (0.152) R2dD : 0.0393 R2D : -0.154
β2 : 1.48 (0.105) R2dC : 0.211 R2C : 0.101
β3 : -1.14 (0.133) R2dE : 0.0938 R2E : -0.212
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.64 (0.0941) R2dN8 : 0.5 R2N8 : 0.214
σ : 0.751
deviance : 260.18
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_____
C
peak time of C : 5.4
E
wheather : radiation
threshold : 11.85
memory length : 1391
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
250.45 0.744 5.32 1.13 1.48 -1.19 -1.56 1.69 1.72 5.15 11.85 1392 -- --
255.18 0.744 5.36 0.907 1.48 -1.19 -1.55 -- 1.64 5.1 11.09 1368 -- --
255.83 0.745 5.31 1.17 1.48 -1.21 -- 1.7 1.75 5.35 12.29 1397 -- --
260.18 0.751 5.35 0.876 1.48 -1.14 -- -- 1.64 5.4 11.85 1391 -- --
284.61 0.786 5.33 1.04 -- -1.91 -- 2.12 1.71 -- 11.51 693 -- --
295.96 0.807 5.43 0.563 1.47 -- -1.45 -- 1.29 5.46 -- -- -- --
300.4 0.812 5.43 0.561 1.46 -- -- -- 1.3 5.75 -- -- -- --
292.65 0.797 5.47 0.483 -- -1.49 -- -- 1.22 -- 9.39 751 -- --
275.2 0.773 5.39 -- 1.45 -0.931 -- -- 1.45 5.47 19.69 1394 -- --
411.71 0.948 5.45 0.607 -- -- -- -- 1.33 -- -- -- -- --
308.7 0.822 5.44 -- 1.47 -- -- -- 1.24 5.73 -- -- -- --
290.81 0.794 5.44 -- -- -1.91 -- -- 1.35 -- 8.23 758 -- --
421.43 0.958 5.46 -- -- -- -- -- 1.27 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 244.45 radiation 10.0 1440 > th dose independent rect. 6 8
46 246.89 radiation 10.0 1440 > th dose independent sin 5 NA
52 248.31 humidity 80.0 4320 < th dose independent rect. 6 3
53 248.50 radiation 20.0 1440 < th dose dependent rect. 11 2
68 248.97 radiation 20.0 1440 < th dose dependent rect. 7 8
81 250.33 radiation 20.0 43200 < th dose independent rect. 18 12
83 250.44 radiation 20.0 1440 < th dose dependent rect. 11 22
84 250.45 radiation 20.0 1440 < th dose dependent rect. 21 18
91 250.53 radiation 20.0 1440 < th dose dependent rect. 2 13
100 250.62 radiation 10.0 1440 > th dose independent rect. 11 22
111 250.88 radiation 20.0 1440 < th dose independent rect. 11 22
121 251.41 radiation 30.0 43200 < th dose independent rect. 17 9
125 251.52 radiation 20.0 1440 < th dose independent rect. 11 2
127 251.60 radiation 20.0 1440 < th dose dependent sin 1 NA
154 252.19 radiation 20.0 1440 < th dose dependent rect. 7 20
158 252.21 radiation 20.0 1440 < th dose dependent rect. 7 18
217 252.71 radiation 10.0 1440 > th dose independent no NA NA
297 252.85 wind 9.0 43200 > th dose dependent rect. 14 3
304 252.92 radiation 20.0 1440 < th dose independent rect. 21 17
316 252.96 wind 9.0 43200 > th dose dependent rect. 14 1
322 252.98 radiation 20.0 1440 < th dose independent rect. 2 12
324 252.98 radiation 20.0 1440 < th dose independent rect. 18 20
331 253.00 radiation 20.0 1440 < th dose independent rect. 6 8
366 253.07 humidity 80.0 1440 < th dose independent rect. 2 7
377 253.08 radiation 20.0 1440 < th dose dependent rect. 2 23
378 253.09 radiation 20.0 1440 < th dose dependent no NA NA
386 253.10 radiation 20.0 1440 < th dose dependent rect. 24 23
417 253.18 wind 7.0 4320 > th dose independent rect. 18 2
420 253.20 temperature 25.0 14400 < th dose dependent rect. 13 1
421 253.23 temperature 20.0 270 < th dose independent rect. 24 7
451 253.50 wind 9.0 43200 > th dose independent rect. 14 3
453 253.51 radiation 10.0 1440 > th dose independent rect. 11 2
491 253.85 wind 7.0 4320 < th dose independent rect. 18 2
493 253.89 radiation 10.0 43200 < th dose independent rect. 24 5
512 253.93 radiation 30.0 43200 < th dose independent rect. 17 4
517 253.94 wind 9.0 43200 > th dose independent rect. 12 6
528 254.01 humidity 50.0 720 > th dose dependent rect. 19 18
530 254.02 wind 7.0 4320 > th dose dependent rect. 18 2
536 254.08 humidity 80.0 1440 < th dose dependent rect. 6 3
547 254.16 radiation 20.0 1440 < th dose independent sin 3 NA
548 254.17 wind 9.0 43200 > th dose dependent rect. 11 7
567 254.36 temperature 10.0 43200 > th dose independent rect. 8 9
569 254.37 humidity 60.0 90 > th dose dependent rect. 20 17
590 254.50 radiation 20.0 1440 < th dose dependent rect. 14 23
636 254.76 humidity 80.0 1440 > th dose independent rect. 2 6
655 254.85 wind 9.0 4320 < th dose independent rect. 17 4
657 254.93 radiation 1.0 43200 > th dose independent rect. 4 1
667 254.93 wind 1.0 43200 < th dose dependent rect. 16 1
669 254.93 radiation 1.0 43200 > th dose dependent rect. 4 1
687 254.97 temperature 20.0 14400 > th dose independent rect. 5 16
690 254.97 radiation 20.0 1440 < th dose independent rect. 6 21
699 254.98 radiation 20.0 1440 < th dose independent rect. 2 23
702 254.99 radiation 20.0 1440 < th dose independent no NA NA
709 254.99 radiation 20.0 1440 < th dose independent rect. 6 19
718 254.99 wind 9.0 43200 > th dose dependent rect. 13 5
791 255.15 temperature 20.0 14400 < th dose independent rect. 8 18
810 255.19 temperature 20.0 14400 < th dose independent rect. 5 20
816 255.21 temperature 20.0 14400 > th dose independent sin 23 NA
817 255.21 wind 5.0 4320 < th dose independent rect. 21 1
839 255.26 radiation 40.0 43200 < th dose dependent rect. 19 10
845 255.29 precipitation 0.1 14400 > th dose independent rect. 8 7
863 255.38 radiation 20.0 4320 < th dose independent rect. 17 11
878 255.42 radiation 10.0 43200 < th dose independent rect. 3 2
931 255.56 wind 1.0 43200 < th dose independent rect. 16 2
954 255.59 temperature 20.0 14400 < th dose independent sin 22 NA
970 255.62 wind 5.0 4320 > th dose independent rect. 21 1