Os01g0802200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0802200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.99 | 0.401 | 8.9 | 0.673 | 1.84 | 1.28 | 0.791 | -1.9 | 0.021 | 4.25 | 30.55 | 97 | -- | -- |
| 77.4 | 0.41 | 8.95 | 0.345 | 1.82 | 1.46 | 0.138 | -- | -0.0982 | 4.25 | 59.9 | 82 | -- | -- |
| 74.33 | 0.402 | 8.91 | 0.597 | 1.84 | 1.31 | -- | -1.44 | -0.0113 | 4.22 | 31.1 | 100 | -- | -- |
| 76.35 | 0.407 | 8.94 | 0.356 | 1.84 | 1.27 | -- | -- | -0.0513 | 4.27 | 29.66 | 100 | -- | -- |
| 200.85 | 0.66 | 8.87 | 0.997 | -- | 3.42 | -- | -1.42 | 0.253 | -- | 46.51 | 133 | -- | -- |
| 98.16 | 0.464 | 8.99 | 0.0479 | 2.22 | -- | 0.39 | -- | -0.302 | 4.03 | -- | -- | -- | -- |
| 98.6 | 0.465 | 8.99 | 0.0432 | 2.22 | -- | -- | -- | -0.304 | 4.03 | -- | -- | -- | -- |
| 200.76 | 0.66 | 8.89 | 0.81 | -- | 3.07 | -- | -- | 0.245 | -- | 31.58 | 139 | -- | -- |
| 79.44 | 0.415 | 8.95 | -- | 1.88 | 1.15 | -- | -- | -0.116 | 4.25 | 30.13 | 91 | -- | -- |
| 367.92 | 0.896 | 9 | 0.134 | -- | -- | -- | -- | -0.245 | -- | -- | -- | -- | -- |
| 98.65 | 0.465 | 8.99 | -- | 2.22 | -- | -- | -- | -0.309 | 4.03 | -- | -- | -- | -- |
| 216.88 | 0.686 | 8.92 | -- | -- | 2.86 | -- | -- | 0.114 | -- | 32.03 | 132 | -- | -- |
| 368.39 | 0.896 | 9 | -- | -- | -- | -- | -- | -0.26 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 19 |
| 67 | 67.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 6 |
| 90 | 68.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 11 |
| 119 | 69.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 21 |
| 130 | 69.87 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 151 | 70.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 12 |
| 165 | 70.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 183 | 70.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 15 |
| 248 | 71.64 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 285 | 72.07 | temperature | 30 | 270 | < th | dose dependent | sin | 21 | NA |
| 296 | 72.19 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 316 | 72.37 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 17 |
| 340 | 72.59 | temperature | 25 | 720 | < th | dose independent | rect. | 8 | 6 |
| 349 | 72.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 365 | 72.78 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 4 |
| 390 | 73.03 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 413 | 73.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 448 | 73.54 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 455 | 73.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 487 | 73.78 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 5 |
| 489 | 73.79 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 11 |
| 499 | 73.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 504 | 73.87 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 554 | 74.20 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 9 |
| 571 | 74.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 605 | 74.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 608 | 74.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 666 | 74.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 15 |
| 671 | 74.58 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 719 | 74.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 752 | 74.75 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 756 | 74.75 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 759 | 74.76 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 763 | 74.77 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 780 | 74.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 781 | 74.80 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 833 | 74.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 882 | 75.04 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 894 | 75.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 7 |
| 902 | 75.08 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 999 | 75.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |