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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0800800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0329) R2 : 0.155
β1 : 0.0516 (0.12) R2dD : 0.000314 R2D : -0.00488
β2 : -- (--) R2dC : -- R2C : --
β3 : 17.4 (2.03) R2dE : 1.55 R2E : -1.37
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -43.3 (5.2) R2dD*E : 1.52 R2D*E : -1.41
γ1 : -0.0873 (0.0698) R2dN8 : 0.00396 R2N8 : 0.00247
σ : 0.611
deviance : 172.19
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 9.76
memory length : 10
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12
open length of G : 1.08

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
171.14 0.615 2.9 0.0483 0.161 16.9 0.0405 -42.6 -0.0903 5.19 9.827 10 12 1
199.4 0.663 2.87 0.125 0.158 1.13 -0.0833 -- -0.107 6.32 9.827 10 12 1
170.85 0.609 2.91 0.0419 0.153 17.4 -- -43.3 -0.0953 5.17 9.764 10 12 1.09
196.11 0.652 2.87 0.164 0.163 1.3 -- -- -0.0909 5.26 15.64 8 11.9 1.18
172.19 0.611 2.91 0.0516 -- 17.4 -- -43.3 -0.0873 -- 9.76 10 12 1.08
200.75 0.664 2.87 0.141 0.157 -- -0.116 -- -0.109 6.63 -- -- -- --
200.77 0.664 2.87 0.138 0.158 -- -- -- -0.109 6.31 -- -- -- --
197.48 0.655 2.87 0.169 -- 1.27 -- -- -0.0872 -- 15.64 10 11.9 1.22
190.96 0.644 2.86 -- 0.183 1.97 -- -- -0.0927 4.75 14.66 22 11.6 0.115
202.06 0.664 2.87 0.143 -- -- -- -- -0.106 -- -- -- -- --
201.28 0.664 2.88 -- 0.159 -- -- -- -0.125 6.26 -- -- -- --
191.75 0.645 2.87 -- -- 2.06 -- -- -0.0946 -- 14.6 20 11.6 0.117
202.59 0.664 2.88 -- -- -- -- -- -0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.23 radiation 10.0 10 < th dose dependent rect. 12 1
3 177.07 radiation 10.0 30 < th dose independent rect. 11 2
9 180.12 wind 1.0 90 < th dose dependent rect. 10 1
12 181.29 atmosphere 1005.0 90 < th dose dependent rect. 5 1
24 181.91 atmosphere 1000.0 10 < th dose independent rect. 5 1
52 182.51 temperature 20.0 10 < th dose independent rect. 2 1
54 182.56 wind 3.0 10 < th dose dependent rect. 1 2
69 185.28 wind 3.0 90 < th dose independent rect. 1 1
78 186.17 wind 1.0 10 < th dose independent rect. 1 2
90 186.70 temperature 25.0 30 > th dose dependent rect. 5 1
91 186.78 atmosphere 995.0 90 > th dose dependent rect. 1 1
94 186.80 atmosphere 995.0 10 > th dose dependent rect. 1 2
96 186.86 temperature 30.0 10 < th dose dependent rect. 1 2
102 187.01 atmosphere 1000.0 10 > th dose independent rect. 1 2
128 187.68 atmosphere 1000.0 270 < th dose independent rect. 2 4
150 188.19 humidity 80.0 10 > th dose independent rect. 1 2
160 188.37 humidity 80.0 90 < th dose dependent rect. 4 3
170 188.46 humidity 70.0 90 > th dose dependent rect. 1 1
173 188.51 temperature 25.0 30 > th dose independent rect. 5 1
174 188.51 wind 7.0 30 < th dose independent rect. 3 22
178 188.52 atmosphere 1000.0 90 < th dose independent rect. 4 5
181 188.61 humidity 80.0 90 < th dose independent rect. 4 3
200 188.90 wind 1.0 90 < th dose independent rect. 11 1
204 188.98 radiation 1.0 30 < th dose independent rect. 3 22
214 189.08 precipitation 0.1 30 < th dose independent rect. 3 22
215 189.08 precipitation 0.1 30 < th dose dependent rect. 3 22
220 189.26 precipitation 0.1 10 < th dose independent rect. 1 2
221 189.26 precipitation 0.1 10 < th dose dependent rect. 1 2
247 189.51 temperature 10.0 10 > th dose independent rect. 1 2
250 189.51 humidity 50.0 10 > th dose independent rect. 1 2
254 189.51 atmosphere 1010.0 10 < th dose independent rect. 1 2
256 189.51 radiation 1.0 10 < th dose independent rect. 1 2
261 189.51 temperature 10.0 10 > th dose independent rect. 3 22
262 189.51 radiation 1.0 10 < th dose dependent rect. 1 2
344 189.87 temperature 15.0 720 > th dose independent rect. 14 16
347 189.91 wind 1.0 90 < th dose dependent rect. 10 8
356 190.00 radiation 1.0 30 < th dose dependent rect. 3 22
365 190.05 atmosphere 1000.0 90 < th dose dependent rect. 4 5
366 190.07 temperature 15.0 720 > th dose independent rect. 18 8
384 190.18 precipitation 0.1 720 < th dose independent rect. 6 8
386 190.18 precipitation 0.1 720 < th dose dependent rect. 6 8
399 190.34 wind 1.0 90 > th dose independent rect. 1 1
454 190.71 wind 9.0 1440 < th dose independent rect. 2 1
459 190.71 temperature 10.0 1440 > th dose independent rect. 2 1
463 190.71 temperature 30.0 1440 < th dose independent rect. 2 1
470 190.71 humidity 50.0 1440 > th dose independent rect. 2 1
481 190.71 atmosphere 995.0 1440 > th dose independent rect. 2 1
489 190.71 radiation 1.0 1440 < th dose independent rect. 2 1
510 190.71 temperature 10.0 1440 > th dose independent rect. 3 23
518 190.71 radiation 1.0 1440 < th dose dependent rect. 2 1
572 190.78 temperature 15.0 720 > th dose independent rect. 2 16
598 190.85 wind 9.0 720 < th dose independent rect. 14 16
605 190.87 temperature 15.0 720 > th dose independent rect. 6 8
610 190.92 radiation 10.0 720 < th dose dependent rect. 18 8
622 191.06 atmosphere 1000.0 10 < th dose independent rect. 5 5
629 191.09 atmosphere 995.0 720 > th dose independent rect. 6 8
630 191.09 atmosphere 1015.0 720 < th dose independent rect. 6 8
654 191.27 radiation 10.0 720 < th dose independent rect. 18 8
660 191.29 wind 9.0 720 < th dose independent rect. 18 8
667 191.34 humidity 50.0 720 > th dose independent rect. 18 8
678 191.38 atmosphere 1015.0 720 < th dose independent rect. 2 16
679 191.38 atmosphere 995.0 10 > th dose independent rect. 3 22
690 191.44 wind 9.0 720 < th dose independent rect. 6 8
802 191.81 atmosphere 1015.0 1440 < th dose independent rect. 2 1
819 191.97 humidity 80.0 10 < th dose independent rect. 5 1
825 191.97 humidity 80.0 10 < th dose dependent rect. 5 1
859 192.11 wind 9.0 30 < th dose dependent rect. 3 22
893 192.22 temperature 10.0 10 > th dose dependent rect. 1 2
900 192.27 radiation 1.0 90 > th dose independent rect. 5 1
907 192.31 humidity 70.0 1440 > th dose independent rect. 6 1
941 192.42 wind 9.0 720 < th dose independent rect. 2 16
957 192.51 radiation 30.0 1440 < th dose independent rect. 6 1
965 192.53 atmosphere 1015.0 10 < th dose independent rect. 3 22