Os01g0800400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os01g0800400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.96 | 0.382 | 7.31 | 1.27 | 1.75 | 0.0991 | 1.6 | 4.27 | 0.0606 | 18.3 | 23 | 2442 | -- | -- |
| 72.72 | 0.4 | 7.47 | 0.0479 | 1.58 | 0.794 | 1.65 | -- | -0.311 | 19.1 | 23 | 2442 | -- | -- |
| 71.62 | 0.394 | 7.31 | 1.26 | 1.74 | 0.114 | -- | 4.43 | 0.0651 | 18.3 | 22.73 | 2229 | -- | -- |
| 78.01 | 0.411 | 7.45 | 0.0746 | 1.46 | 0.826 | -- | -- | -0.26 | 19 | 25.55 | 144 | -- | -- |
| 142.53 | 0.556 | 7.44 | -0.187 | -- | 1.89 | -- | 0.013 | -0.382 | -- | 24.68 | 413 | -- | -- |
| 82.63 | 0.426 | 7.44 | 0.188 | 1.74 | -- | 1.71 | -- | -0.195 | 18.5 | -- | -- | -- | -- |
| 89.77 | 0.444 | 7.44 | 0.166 | 1.74 | -- | -- | -- | -0.189 | 18.4 | -- | -- | -- | -- |
| 142.52 | 0.556 | 7.44 | -0.195 | -- | 1.91 | -- | -- | -0.388 | -- | 24.62 | 404 | -- | -- |
| 77.76 | 0.411 | 7.45 | -- | 1.48 | 0.874 | -- | -- | -0.236 | 18.9 | 25.61 | 135 | -- | -- |
| 247.89 | 0.736 | 7.41 | 0.12 | -- | -- | -- | -- | -0.226 | -- | -- | -- | -- | -- |
| 90.5 | 0.445 | 7.44 | -- | 1.74 | -- | -- | -- | -0.207 | 18.4 | -- | -- | -- | -- |
| 143.48 | 0.558 | 7.44 | -- | -- | 1.88 | -- | -- | -0.359 | -- | 24.7 | 402 | -- | -- |
| 248.28 | 0.735 | 7.41 | -- | -- | -- | -- | -- | -0.239 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 65.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 14 |
| 4 | 65.92 | temperature | 30 | 30 | < th | dose dependent | rect. | 6 | 17 |
| 7 | 66.19 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 14 |
| 19 | 66.32 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 26 | 66.47 | temperature | 25 | 1440 | > th | dose dependent | sin | 15 | NA |
| 27 | 66.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 22 |
| 33 | 66.51 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 34 | 66.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 42 | 66.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 84 | 66.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 91 | 66.67 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 19 |
| 94 | 66.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 21 |
| 98 | 66.68 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 143 | 66.72 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 206 | 66.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 279 | 66.87 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 349 | 66.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 412 | 67.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 441 | 67.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 22 |
| 587 | 67.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 612 | 67.28 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 688 | 67.35 | temperature | 10 | 10 | > th | dose dependent | sin | 22 | NA |
| 928 | 67.59 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 940 | 67.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 1 |