Os01g0800200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0800200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 236.14 | 0.722 | 3.72 | -1.35 | 0.0264 | 1.02 | -1.38 | -0.528 | -0.352 | 16.1 | 1.017 | 1443 | -- | -- |
| 236.41 | 0.716 | 3.72 | -1.29 | 0.0278 | 1.1 | -1.38 | -- | -0.353 | 16 | 1.01 | 1444 | -- | -- |
| 241.52 | 0.724 | 3.73 | -1.38 | 0.0255 | 1.03 | -- | -0.613 | -0.366 | 17.5 | 1.012 | 1449 | -- | -- |
| 241.83 | 0.724 | 3.72 | -1.3 | 0.0321 | 1.12 | -- | -- | -0.35 | 17.6 | 1.019 | 1445 | -- | -- |
| 241.54 | 0.724 | 3.73 | -1.39 | -- | 1.05 | -- | -0.677 | -0.368 | -- | 1.012 | 1451 | -- | -- |
| 251.52 | 0.744 | 3.68 | -1.06 | 0.0284 | -- | -1.47 | -- | -0.204 | 15.8 | -- | -- | -- | -- |
| 257.91 | 0.752 | 3.69 | -1.08 | 0.0203 | -- | -- | -- | -0.212 | 16.3 | -- | -- | -- | -- |
| 241.88 | 0.724 | 3.72 | -1.3 | -- | 1.12 | -- | -- | -0.351 | -- | 1.018 | 1444 | -- | -- |
| 283.01 | 0.784 | 3.7 | -- | 0.018 | 0.687 | -- | -- | -0.23 | 17.2 | 1.496 | 1486 | -- | -- |
| 257.93 | 0.75 | 3.69 | -1.08 | -- | -- | -- | -- | -0.213 | -- | -- | -- | -- | -- |
| 288.87 | 0.795 | 3.66 | -- | 0.0414 | -- | -- | -- | -0.0914 | 15.7 | -- | -- | -- | -- |
| 282.51 | 0.783 | 3.68 | -- | -- | 0.641 | -- | -- | -0.173 | -- | 1.5 | 1453 | -- | -- |
| 288.96 | 0.793 | 3.66 | -- | -- | -- | -- | -- | -0.0923 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 233.03 | wind | 9 | 90 | > th | dose dependent | rect. | 11 | 1 |
| 4 | 234.02 | wind | 9 | 30 | > th | dose independent | rect. | 11 | 1 |
| 41 | 235.63 | radiation | 1 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 45 | 235.82 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 22 |
| 46 | 235.87 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 52 | 236.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 2 | 22 |
| 54 | 236.10 | radiation | 1 | 1440 | > th | dose independent | rect. | 6 | 13 |
| 75 | 236.17 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 77 | 236.20 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 123 | 236.22 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 135 | 236.33 | radiation | 1 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 138 | 236.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 6 | 15 |
| 140 | 236.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 6 | 22 |
| 141 | 236.34 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 142 | 236.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 6 | 13 |
| 146 | 236.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 22 |
| 151 | 236.36 | radiation | 1 | 1440 | < th | dose independent | rect. | 24 | 19 |
| 155 | 236.36 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 22 |
| 159 | 236.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 165 | 236.38 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 175 | 236.39 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 182 | 236.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 21 | 22 |
| 217 | 236.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 21 |
| 228 | 236.58 | radiation | 1 | 1440 | > th | dose independent | sin | 0 | NA |
| 268 | 236.78 | radiation | 1 | 1440 | < th | dose independent | sin | 0 | NA |
| 281 | 236.83 | wind | 5 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 283 | 236.84 | radiation | 1 | 1440 | > th | dose independent | sin | 13 | NA |
| 302 | 237.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 6 | 23 |
| 306 | 237.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 6 | 13 |
| 307 | 237.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 6 | 15 |
| 319 | 237.04 | radiation | 1 | 1440 | < th | dose dependent | sin | 1 | NA |
| 328 | 237.09 | radiation | 1 | 1440 | < th | dose independent | sin | 13 | NA |
| 334 | 237.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 337 | 237.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 353 | 237.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 354 | 237.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 18 |
| 360 | 237.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 361 | 237.15 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 363 | 237.16 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 398 | 237.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 409 | 237.32 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 415 | 237.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 10 |
| 416 | 237.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 15 |
| 432 | 237.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 12 |
| 444 | 237.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 19 |
| 463 | 237.47 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 488 | 237.53 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 493 | 237.55 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 494 | 237.55 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 546 | 237.66 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 554 | 237.69 | wind | 5 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 555 | 237.69 | wind | 5 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 659 | 237.91 | wind | 9 | 30 | > th | dose dependent | sin | 6 | NA |
| 664 | 237.94 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 793 | 238.21 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 835 | 238.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 844 | 238.34 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 10 |
| 847 | 238.36 | radiation | 1 | 1440 | > th | dose independent | rect. | 16 | 3 |
| 919 | 238.46 | radiation | 1 | 1440 | < th | dose dependent | sin | 13 | NA |