Os01g0800000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0800000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 364.28 | 0.897 | 3.03 | 0.297 | 0.173 | -1.05 | 0.295 | 2.25 | 0.0686 | 16.5 | 79.8 | 1423 | -- | -- |
| 368.37 | 0.894 | 3.04 | 0.122 | 0.141 | -0.925 | 0.275 | -- | 0.0333 | 16.5 | 79.26 | 1396 | -- | -- |
| 364.49 | 0.889 | 3.03 | 0.299 | 0.189 | -1.06 | -- | 2.27 | 0.0693 | 16.6 | 79.7 | 1439 | -- | -- |
| 368.51 | 0.894 | 3.04 | 0.123 | 0.147 | -0.93 | -- | -- | 0.0325 | 17.4 | 79.29 | 1394 | -- | -- |
| 365.39 | 0.89 | 3.03 | 0.32 | -- | -1.1 | -- | 2.31 | 0.0588 | -- | 79 | 1390 | -- | -- |
| 378.7 | 0.912 | 3.06 | 0.0921 | 0.18 | -- | 0.394 | -- | -0.024 | 16.6 | -- | -- | -- | -- |
| 379.06 | 0.912 | 3.06 | 0.0942 | 0.187 | -- | -- | -- | -0.022 | 17.2 | -- | -- | -- | -- |
| 369.52 | 0.895 | 3.04 | 0.12 | -- | -0.949 | -- | -- | 0.0304 | -- | 79.47 | 1366 | -- | -- |
| 368.91 | 0.895 | 3.04 | -- | 0.142 | -0.929 | -- | -- | 0.0255 | 17.3 | 79 | 1396 | -- | -- |
| 380.89 | 0.912 | 3.05 | 0.0877 | -- | -- | -- | -- | -0.0267 | -- | -- | -- | -- | -- |
| 379.3 | 0.911 | 3.06 | -- | 0.185 | -- | -- | -- | -0.0325 | 17.2 | -- | -- | -- | -- |
| 369.9 | 0.896 | 3.04 | -- | -- | -0.94 | -- | -- | 0.0165 | -- | 79.23 | 1366 | -- | -- |
| 381.09 | 0.911 | 3.06 | -- | -- | -- | -- | -- | -0.0364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 355.06 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 14 | 15 |
| 3 | 356.67 | atmosphere | 1010 | 30 | > th | dose independent | sin | 10 | NA |
| 8 | 356.84 | atmosphere | 1010 | 90 | > th | dose independent | rect. | 23 | 10 |
| 11 | 356.91 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 14 | 8 |
| 13 | 357.03 | atmosphere | 1010 | 90 | > th | dose independent | rect. | 12 | 21 |
| 24 | 357.13 | radiation | 40 | 30 | > th | dose independent | rect. | 13 | 22 |
| 25 | 357.13 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 16 | 8 |
| 32 | 357.37 | atmosphere | 1010 | 90 | < th | dose independent | sin | 10 | NA |
| 42 | 357.60 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 17 | 10 |
| 45 | 357.78 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 46 | 357.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 61 | 358.03 | atmosphere | 1010 | 720 | < th | dose independent | rect. | 11 | 11 |
| 66 | 358.10 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 12 | 22 |
| 71 | 358.16 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 20 | 4 |
| 88 | 358.39 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 23 | 11 |
| 109 | 358.54 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 20 | 10 |
| 118 | 358.60 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 22 | 1 |
| 134 | 358.70 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 139 | 358.72 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 20 | 7 |
| 164 | 358.79 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 12 | 1 |
| 165 | 358.79 | radiation | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 195 | 358.87 | radiation | 40 | 30 | > th | dose independent | sin | 12 | NA |
| 216 | 358.96 | atmosphere | 1010 | 30 | > th | dose independent | rect. | 12 | 12 |
| 277 | 359.05 | atmosphere | 1010 | 10 | > th | dose independent | rect. | 23 | 1 |
| 579 | 359.11 | atmosphere | 1010 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 587 | 359.16 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 13 | 14 |
| 641 | 359.29 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 11 | 18 |
| 654 | 359.35 | radiation | 40 | 10 | < th | dose independent | sin | 11 | NA |
| 671 | 359.38 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 891 | 359.56 | radiation | 30 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 953 | 359.78 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 973 | 359.79 | radiation | 40 | 270 | > th | dose independent | rect. | 8 | 2 |