Os01g0799600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0799600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.11 | 0.189 | 3.1 | 0.114 | 0.122 | 0.206 | 0.00575 | 0.783 | -0.0451 | 8.15 | 91 | 5916 | -- | -- |
| 16.91 | 0.192 | 3.1 | 0.0826 | 0.144 | 0.234 | 0.000239 | -- | -0.0636 | 7.95 | 89 | 7895 | -- | -- |
| 16.11 | 0.187 | 3.1 | 0.114 | 0.122 | 0.206 | -- | 0.784 | -0.0452 | 8.14 | 91 | 5913 | -- | -- |
| 16.9 | 0.191 | 3.1 | 0.0778 | 0.145 | 0.227 | -- | -- | -0.0661 | 8.23 | 91.01 | 7969 | -- | -- |
| 16.92 | 0.192 | 3.1 | 0.115 | -- | 0.211 | -- | 0.778 | -0.0443 | -- | 91 | 5857 | -- | -- |
| 17.66 | 0.197 | 3.09 | 0.0457 | 0.12 | -- | -0.00209 | -- | -0.0152 | 8.14 | -- | -- | -- | -- |
| 17.66 | 0.197 | 3.09 | 0.0456 | 0.12 | -- | -- | -- | -0.0152 | 8.14 | -- | -- | -- | -- |
| 17.68 | 0.196 | 3.1 | 0.0713 | -- | 0.226 | -- | -- | -0.0625 | -- | 90.54 | 7218 | -- | -- |
| 17.05 | 0.192 | 3.1 | -- | 0.139 | 0.207 | -- | -- | -0.0724 | 8.21 | 89 | 7978 | -- | -- |
| 18.45 | 0.201 | 3.09 | 0.0466 | -- | -- | -- | -- | -0.0138 | -- | -- | -- | -- | -- |
| 17.72 | 0.197 | 3.09 | -- | 0.12 | -- | -- | -- | -0.0203 | 8.12 | -- | -- | -- | -- |
| 17.76 | 0.196 | 3.1 | -- | -- | 0.243 | -- | -- | -0.0622 | -- | 88 | 4332 | -- | -- |
| 18.51 | 0.201 | 3.09 | -- | -- | -- | -- | -- | -0.019 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.96 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 13 |
| 2 | 15.97 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 4 | 15.98 | humidity | 80 | 14400 | < th | dose dependent | rect. | 23 | 11 |
| 8 | 16.00 | humidity | 70 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 10 | 16.01 | humidity | 70 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 21 | 16.02 | humidity | 70 | 14400 | > th | dose independent | rect. | 8 | 2 |
| 23 | 16.03 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 24 | 16.03 | humidity | 70 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 26 | 16.04 | humidity | 70 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 54 | 16.16 | humidity | 80 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 66 | 16.21 | humidity | 80 | 14400 | < th | dose dependent | sin | 8 | NA |
| 108 | 16.25 | humidity | 50 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 112 | 16.26 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 113 | 16.26 | humidity | 70 | 4320 | < th | dose independent | rect. | 8 | 9 |
| 115 | 16.26 | humidity | 70 | 4320 | > th | dose independent | rect. | 4 | 13 |
| 137 | 16.27 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 138 | 16.27 | humidity | 60 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 139 | 16.27 | humidity | 60 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 142 | 16.27 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 178 | 16.27 | humidity | 50 | 4320 | > th | dose dependent | sin | 4 | NA |
| 226 | 16.28 | humidity | 50 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 250 | 16.28 | humidity | 90 | 4320 | < th | dose dependent | rect. | 23 | 17 |
| 254 | 16.29 | humidity | 70 | 4320 | > th | dose independent | sin | 1 | NA |
| 259 | 16.29 | humidity | 70 | 4320 | < th | dose independent | rect. | 8 | 7 |
| 260 | 16.29 | humidity | 70 | 4320 | < th | dose independent | rect. | 10 | 7 |
| 293 | 16.29 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 2 |
| 323 | 16.30 | humidity | 90 | 30 | < th | dose independent | rect. | 3 | 2 |
| 326 | 16.30 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 3 |
| 334 | 16.30 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 400 | 16.31 | humidity | 50 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 415 | 16.31 | humidity | 90 | 4320 | < th | dose dependent | rect. | 4 | 12 |
| 438 | 16.32 | humidity | 70 | 4320 | < th | dose independent | sin | 0 | NA |
| 444 | 16.32 | humidity | 70 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 484 | 16.32 | humidity | 90 | 4320 | < th | dose dependent | sin | 5 | NA |
| 574 | 16.34 | humidity | 70 | 4320 | > th | dose independent | no | NA | NA |
| 576 | 16.34 | humidity | 70 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 578 | 16.34 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 676 | 16.34 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 677 | 16.34 | humidity | 70 | 4320 | > th | dose independent | rect. | 16 | 23 |
| 689 | 16.34 | humidity | 90 | 4320 | < th | dose dependent | rect. | 10 | 6 |
| 721 | 16.35 | humidity | 70 | 4320 | > th | dose independent | rect. | 14 | 4 |
| 742 | 16.35 | humidity | 70 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 757 | 16.35 | humidity | 90 | 4320 | < th | dose dependent | rect. | 11 | 3 |
| 898 | 16.37 | humidity | 70 | 4320 | < th | dose independent | no | NA | NA |
| 999 | 16.37 | humidity | 70 | 4320 | < th | dose independent | rect. | 10 | 23 |