Os01g0799000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NB-ARC domain containing protein.
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Os01g0799000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NB-ARC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.21 | 0.504 | 6.15 | -1.67 | 0.173 | -2.24 | 0.364 | -0.594 | -0.352 | 21.7 | 26.34 | 93 | -- | -- |
| 115.53 | 0.501 | 6.16 | -1.76 | 0.182 | -2.21 | 0.216 | -- | -0.374 | 22.6 | 26.95 | 92 | -- | -- |
| 115.46 | 0.5 | 6.15 | -1.74 | 0.176 | -2.25 | -- | -0.356 | -0.367 | 23.2 | 26.87 | 97 | -- | -- |
| 115.64 | 0.501 | 6.16 | -1.79 | 0.175 | -2.23 | -- | -- | -0.38 | 23.3 | 27.05 | 97 | -- | -- |
| 116.76 | 0.503 | 6.14 | -1.71 | -- | -2.19 | -- | -0.379 | -0.351 | -- | 26.51 | 120 | -- | -- |
| 185.44 | 0.638 | 6.05 | -1.24 | 0.509 | -- | 0.367 | -- | 0.107 | 15.9 | -- | -- | -- | -- |
| 185.83 | 0.638 | 6.05 | -1.23 | 0.51 | -- | -- | -- | 0.109 | 15.8 | -- | -- | -- | -- |
| 116.99 | 0.504 | 6.15 | -1.77 | -- | -2.16 | -- | -- | -0.362 | -- | 26.65 | 120 | -- | -- |
| 191.09 | 0.647 | 6.08 | -- | 0.247 | -1.48 | -- | -- | -0.0361 | 19.5 | 27.52 | 54 | -- | -- |
| 200.15 | 0.661 | 6.05 | -1.25 | -- | -- | -- | -- | 0.0954 | -- | -- | -- | -- | -- |
| 225.87 | 0.703 | 6.02 | -- | 0.534 | -- | -- | -- | 0.246 | 15.8 | -- | -- | -- | -- |
| 193.19 | 0.647 | 6.08 | -- | -- | -1.57 | -- | -- | -0.0554 | -- | 27.06 | 104 | -- | -- |
| 241.61 | 0.726 | 6.02 | -- | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.37 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 2 | 115.81 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 3 | 115.95 | temperature | 25 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 4 | 116.36 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 6 | 116.44 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 7 | 116.53 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 9 | 116.85 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 10 | 117.04 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 11 | 117.21 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 12 | 117.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 14 | 117.33 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 17 | 117.39 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 18 | 117.41 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 26 | 117.86 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 39 | 118.50 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 65 | 119.57 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 113 | 121.29 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 160 | 122.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 210 | 123.55 | temperature | 10 | 90 | > th | dose dependent | sin | 7 | NA |
| 257 | 124.95 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 330 | 126.31 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 517 | 129.04 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 22 |
| 521 | 129.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 21 |
| 547 | 129.24 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 570 | 129.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 574 | 129.34 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 591 | 129.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 630 | 129.56 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 650 | 129.64 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 691 | 129.79 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 734 | 129.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 13 |
| 816 | 130.31 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 877 | 130.66 | temperature | 25 | 1440 | < th | dose dependent | sin | 5 | NA |
| 914 | 130.86 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 13 |
| 945 | 131.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 11 |