Os01g0797700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os01g0797700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 668.09 | 1.21 | 7.37 | -1.31 | 0.361 | 1.14 | -0.443 | 13.4 | -3.04 | 8.79 | 31.4 | 669 | -- | -- |
| 675.4 | 1.21 | 7.51 | -2.23 | 0.202 | 2.42 | -0.346 | -- | -2.96 | 8.63 | 30.6 | 672 | -- | -- |
| 668.2 | 1.2 | 7.37 | -1.34 | 0.4 | 1.19 | -- | 13.4 | -3.03 | 7.85 | 31.39 | 660 | -- | -- |
| 671.71 | 1.21 | 7.51 | -2.47 | 0.404 | 2.69 | -- | -- | -3.04 | 7.84 | 30.6 | 640 | -- | -- |
| 675.54 | 1.21 | 7.38 | -1.33 | -- | 1.02 | -- | 13.1 | -3.04 | -- | 31.5 | 669 | -- | -- |
| 821.38 | 1.34 | 7.57 | -2.07 | 0.3 | -- | 1.66 | -- | -3.28 | 20 | -- | -- | -- | -- |
| 827.15 | 1.35 | 7.57 | -2.1 | 0.377 | -- | -- | -- | -3.27 | 17.8 | -- | -- | -- | -- |
| 679.69 | 1.21 | 7.49 | -2.42 | -- | 2.52 | -- | -- | -3 | -- | 30.5 | 651 | -- | -- |
| 828.28 | 1.34 | 7.44 | -- | 0.295 | 2.35 | -- | -- | -2.8 | 7.97 | 30.64 | 627 | -- | -- |
| 834.52 | 1.35 | 7.56 | -2.12 | -- | -- | -- | -- | -3.28 | -- | -- | -- | -- | -- |
| 943.83 | 1.44 | 7.51 | -- | 0.41 | -- | -- | -- | -3.04 | 17.6 | -- | -- | -- | -- |
| 832.32 | 1.34 | 7.46 | -- | -- | 2.14 | -- | -- | -2.83 | -- | 33 | 692 | -- | -- |
| 952.58 | 1.44 | 7.51 | -- | -- | -- | -- | -- | -3.05 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 653.19 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 2 | 655.15 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 1 |
| 20 | 662.33 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 22 |
| 23 | 664.63 | temperature | 30 | 720 | > th | dose dependent | rect. | 11 | 6 |
| 42 | 667.17 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 3 |
| 61 | 668.30 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 8 |
| 63 | 668.62 | temperature | 30 | 720 | > th | dose dependent | rect. | 14 | 1 |
| 65 | 668.72 | temperature | 30 | 720 | > th | dose dependent | sin | 23 | NA |
| 76 | 669.74 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 15 |
| 80 | 670.11 | temperature | 30 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 95 | 670.16 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |
| 240 | 671.79 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 8 |
| 241 | 671.81 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 23 |
| 243 | 672.14 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 9 |
| 261 | 672.53 | temperature | 30 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 312 | 674.89 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 17 |
| 313 | 674.91 | temperature | 30 | 720 | > th | dose independent | sin | 2 | NA |
| 345 | 675.17 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 23 |
| 350 | 675.50 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 6 |
| 354 | 675.66 | radiation | 20 | 720 | > th | dose independent | rect. | 16 | 1 |
| 369 | 675.75 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 12 |
| 385 | 675.89 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 22 |
| 386 | 676.03 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 15 |
| 387 | 676.06 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 14 |
| 399 | 676.92 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 20 |
| 400 | 677.04 | temperature | 30 | 720 | < th | dose independent | sin | 0 | NA |
| 403 | 677.09 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 23 |
| 437 | 678.11 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 535 | 678.33 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 23 |
| 547 | 678.85 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 18 |
| 555 | 679.50 | temperature | 30 | 720 | > th | dose independent | rect. | 12 | 23 |
| 567 | 679.92 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 21 |
| 603 | 680.48 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 606 | 680.56 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 17 |
| 609 | 680.69 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 18 |
| 747 | 685.20 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 19 |
| 749 | 685.22 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 3 |
| 861 | 689.22 | temperature | 25 | 90 | > th | dose dependent | sin | 12 | NA |
| 873 | 690.03 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 908 | 690.68 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 973 | 696.98 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 16 |
| 989 | 698.33 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 2 |