Os01g0795400 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0795400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Subtilase.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6.4	(0.06)	R²	:	0.579
β₁	:	-2.01	(0.229)	R²_dD	:	0.0853	R²_D	:	0.153
β₂	:	2.35	(0.147)	R²_dC	:	0.251	R²_C	:	0.203
β₃	:	-2.28	(0.17)	R²_dE	:	0.196	R²_E	:	0.209
β₄	:	3.36	(0.586)	R²_dD*C	:	0.0229	R²_D*C	:	0.0239
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.182	(0.129)	R²_dN8	:	0.00373	R²_N8	:	0.00659
σ	:	1.12
deviance	:	579.24
__

_____

C
peak time of C	:	2.23
E
wheather	:	temperature
threshold	:	24.91
memory length	:	1431
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	15.4
open length of G	:	0.785

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
573.17	1.12	6.48	-2.74	2.44	-2.15	3.12	-2.51	0.0735	2.16	24.87	1419	15.4	1.08
579.24	1.12	6.4	-2.01	2.35	-2.28	3.36	--	0.182	2.23	24.91	1431	15.4	0.785
607.17	1.15	6.49	-2.71	2.42	-2.17	--	-1.9	0.0308	2.28	24.39	1420	15.4	1.22
602.82	1.14	6.4	-2.12	2.39	-2.35	--	--	0.237	2.26	24.39	1428	15.4	0.0452
677.62	1.21	6.58	-2.05	--	-5.01	--	-1.14	0.456	--	13.1	2035	6.42	5.32
823.15	1.35	6.44	-2.93	2.21	--	2.43	--	0.0399	2.13	--	--	--	--
844.98	1.36	6.45	-3	2.23	--	--	--	0.0245	2.28	--	--	--	--
655.83	1.19	6.34	-1.75	--	-4.95	--	--	0.495	--	11.52	2072	6.92	4.08
718.67	1.25	6.35	--	2.37	-2.27	--	--	0.439	2.26	25.4	1424	15.4	0.0164
1139.3	1.58	6.43	-2.91	--	--	--	--	0.0786	--	--	--	--	--
1082.02	1.54	6.37	--	2.17	--	--	--	0.359	2.25	--	--	--	--
725.73	1.25	6.28	--	--	-5.7	--	--	0.734	--	14.1	2046	7.55	3.48
1361.95	1.72	6.36	--	--	--	--	--	0.401	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	576.03	temperature	25	1440	> th	dose dependent	rect.	15	1
3	576.86	temperature	25	1440	> th	dose dependent	rect.	13	4
12	578.58	temperature	10	1440	> th	dose dependent	rect.	15	3
17	578.86	temperature	10	1440	> th	dose dependent	rect.	13	6
22	579.35	temperature	20	1440	> th	dose dependent	rect.	11	7
36	580.02	temperature	10	1440	> th	dose dependent	rect.	11	8
168	585.17	temperature	20	1440	> th	dose dependent	sin	21	NA
178	585.50	temperature	10	1440	> th	dose dependent	sin	21	NA
273	587.84	temperature	25	1440	> th	dose dependent	rect.	23	19
586	592.29	temperature	25	720	> th	dose dependent	sin	9	NA
637	592.91	temperature	25	1440	> th	dose dependent	no	NA	NA
682	593.40	temperature	25	720	> th	dose dependent	rect.	20	15
806	596.20	temperature	25	720	> th	dose dependent	rect.	17	18
992	599.64	temperature	10	720	> th	dose dependent	rect.	22	21