Os01g0791200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 2) (NADH-plastoquinone oxidoreductase chain 2).
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Os01g0791200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NAD(P)H-quinone oxidoreductase chain 2, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 2) (NADH-plastoquinone oxidoreductase chain 2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.19 | 0.585 | 9.3 | 1.24 | 2.42 | 4.63 | -1.64 | -3.67 | 0.332 | 22.2 | 29.8 | 826 | 17.3 | 17.2 |
| 165.79 | 0.6 | 9.35 | 1.02 | 2.33 | 4.63 | 0.0372 | -- | 0.229 | 22.4 | 29.96 | 846 | 16.8 | 17.9 |
| 160.23 | 0.59 | 9.31 | 1.09 | 2.21 | 4.48 | -- | -1.78 | 0.328 | 22.7 | 28.41 | 862 | 17.6 | 16.7 |
| 162.89 | 0.594 | 9.34 | 0.778 | 2.09 | 4.31 | -- | -- | 0.261 | 22.6 | 28.29 | 854 | 17.2 | 17.4 |
| 192.58 | 0.646 | 9.31 | 0.698 | -- | 3.89 | -- | -0.402 | 0.0509 | -- | 43.53 | 1625 | 13.9 | 16.8 |
| 364.86 | 0.895 | 9.49 | -0.252 | 0.947 | -- | 0.246 | -- | -0.546 | 23.2 | -- | -- | -- | -- |
| 365.12 | 0.895 | 9.49 | -0.262 | 0.946 | -- | -- | -- | -0.547 | 23.2 | -- | -- | -- | -- |
| 176.13 | 0.618 | 9.26 | 0.718 | -- | 4.22 | -- | -- | 0.183 | -- | 70.22 | 1509 | 15.8 | 15.6 |
| 175.08 | 0.616 | 9.37 | -- | 2.44 | 4.67 | -- | -- | 0.15 | 22.4 | 29.98 | 848 | 17.6 | 16.4 |
| 421.1 | 0.959 | 9.47 | -0.239 | -- | -- | -- | -- | -0.539 | -- | -- | -- | -- | -- |
| 366.93 | 0.896 | 9.49 | -- | 0.944 | -- | -- | -- | -0.518 | 23.2 | -- | -- | -- | -- |
| 187.99 | 0.639 | 9.4 | -- | -- | 3.74 | -- | -- | -0.0909 | -- | 75.14 | 1503 | 16.1 | 15.4 |
| 422.61 | 0.96 | 9.46 | -- | -- | -- | -- | -- | -0.512 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 159.12 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 17 |
| 2 | 160.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 7 | 161.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 9 | 161.33 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 27 | 162.85 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 67 | 164.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 13 |
| 100 | 165.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 13 |
| 166 | 166.26 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 281 | 169.33 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 284 | 169.41 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 667 | 173.53 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 2 |