Os01g0790900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os01g0790900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113.16 | 0.5 | 12.4 | 1.96 | 0.157 | -2.53 | -1.01 | 4.68 | 0.301 | 23 | 17.79 | 2502 | -- | -- |
| 137.01 | 0.545 | 12.5 | 1.1 | 0.0612 | -2.73 | 0.695 | -- | 0.119 | 12.1 | 13.81 | 7056 | -- | -- |
| 116.99 | 0.504 | 12.4 | 1.92 | 0.179 | -2.52 | -- | 4.39 | 0.285 | 21.3 | 17.94 | 2510 | -- | -- |
| 138.01 | 0.547 | 12.5 | 1.18 | 0.091 | -2.88 | -- | -- | 0.164 | 16.3 | 12.21 | 7025 | -- | -- |
| 117.76 | 0.505 | 12.4 | 1.96 | -- | -2.46 | -- | 4.41 | 0.28 | -- | 17.74 | 2697 | -- | -- |
| 275.54 | 0.778 | 12.7 | -0.315 | 0.212 | -- | 0.73 | -- | -0.597 | 13.6 | -- | -- | -- | -- |
| 277.3 | 0.78 | 12.7 | -0.289 | 0.233 | -- | -- | -- | -0.592 | 15 | -- | -- | -- | -- |
| 134.66 | 0.54 | 12.6 | 0.971 | -- | -2.81 | -- | -- | -0.0176 | -- | 13.26 | 4177 | -- | -- |
| 144.58 | 0.56 | 12.6 | -- | 0.306 | -2.39 | -- | -- | -0.138 | 18.9 | 16.08 | 2129 | -- | -- |
| 280.42 | 0.782 | 12.7 | -0.299 | -- | -- | -- | -- | -0.598 | -- | -- | -- | -- | -- |
| 279.5 | 0.782 | 12.7 | -- | 0.239 | -- | -- | -- | -0.559 | 15 | -- | -- | -- | -- |
| 146.33 | 0.563 | 12.6 | -- | -- | -2.35 | -- | -- | -0.181 | -- | 13.24 | 2578 | -- | -- |
| 282.78 | 0.785 | 12.7 | -- | -- | -- | -- | -- | -0.564 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 17 |
| 12 | 113.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 13 | 113.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 13 |
| 16 | 113.87 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 22 | 113.96 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 31 | 114.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 56 | 115.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 61 | 115.57 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 6 |
| 72 | 115.72 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 122 | 116.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 131 | 116.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 16 |
| 139 | 116.63 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 200 | 117.33 | temperature | 20 | 4320 | > th | dose dependent | sin | 19 | NA |
| 211 | 117.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 237 | 117.65 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 263 | 117.86 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 338 | 118.36 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 358 | 118.48 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 363 | 118.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 365 | 118.50 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 386 | 118.59 | temperature | 30 | 1440 | < th | dose dependent | sin | 12 | NA |
| 488 | 119.16 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 564 | 119.50 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 591 | 119.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 601 | 119.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 763 | 120.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 7 |
| 781 | 120.11 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 2 |