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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0789200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Serine/threonine-protein kinase PBS1 (EC 2.7.1.37) (AvrPphB susceptible protein 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.12 (0.032) R2 : 0.37
β1 : 0.787 (0.117) R2dD : 0.0673 R2D : 0.0295
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.48 (0.18) R2dE : 0.499 R2E : -0.25
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 11.8 (0.819) R2dD*E : 0.536 R2D*E : -0.14
γ1 : 0.0738 (0.0691) R2dN8 : 0.00228 R2N8 : -0.0146
σ : 0.587
deviance : 158.82
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_____
C
peak time of C : --
E
wheather : wind
threshold : 6.3
memory length : 4389
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 9.9

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154.6 0.584 3.12 0.768 0.131 2.45 0.963 11.8 0.0704 14.8 6.301 4389 18.3 9.9
211.74 0.678 3.04 1.1 0.217 1.24 0.919 -- 0.191 13.4 5.447 10860 17 9.82
157.72 0.585 3.12 0.796 0.127 2.48 -- 11.9 0.0785 15.6 6.3 4389 18.3 9.9
209.99 0.675 3.03 1.25 0.195 1.6 -- -- 0.247 12.7 5.249 10812 17.7 6.62
158.82 0.587 3.12 0.787 -- 2.48 -- 11.8 0.0738 -- 6.3 4389 18.3 9.9
237.13 0.722 3.07 0.573 0.178 -- 0.956 -- -0.018 14.3 -- -- -- --
240.46 0.726 3.07 0.599 0.183 -- -- -- -0.0121 14.8 -- -- -- --
209.95 0.675 3 1.29 -- 1.5 -- -- 0.299 -- 5.228 10817 17.4 6.17
241.08 0.723 3.04 -- 0.136 0.809 -- -- 0.0516 12.1 5.203 10592 18.3 7.16
242.4 0.727 3.07 0.591 -- -- -- -- -0.0168 -- -- -- -- --
249.91 0.739 3.08 -- 0.171 -- -- -- -0.0788 14.8 -- -- -- --
182.42 0.629 3.1 -- -- 1.68 -- -- 0.115 -- 6.476 11976 20.4 0.0332
251.62 0.74 3.08 -- -- -- -- -- -0.0824 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 156.43 wind 7 4320 < th dose independent rect. 18 10
2 158.72 wind 7 4320 > th dose independent rect. 18 10
3 159.23 wind 7 4320 > th dose dependent rect. 18 10
6 160.90 wind 7 4320 < th dose independent rect. 18 5
12 161.76 wind 9 4320 > th dose dependent rect. 20 8
15 162.20 wind 5 4320 > th dose dependent rect. 20 3
19 162.61 wind 7 4320 > th dose independent rect. 18 4
25 162.87 humidity 90 1440 < th dose dependent rect. 3 1
60 164.69 wind 9 4320 > th dose dependent rect. 20 1
82 165.14 wind 5 4320 > th dose independent rect. 21 1
146 167.42 temperature 20 1440 > th dose independent rect. 18 1
169 169.50 temperature 20 1440 > th dose independent rect. 18 3
171 169.88 atmosphere 995 14400 > th dose independent rect. 17 3
175 170.26 atmosphere 995 14400 > th dose independent rect. 17 1
176 170.32 temperature 20 1440 < th dose independent rect. 18 1
182 170.68 atmosphere 995 14400 < th dose independent rect. 17 1
183 170.68 atmosphere 995 14400 < th dose dependent rect. 17 1
191 170.70 humidity 80 1440 < th dose independent rect. 22 1
192 170.72 humidity 90 1440 < th dose dependent rect. 2 5
221 171.51 wind 5 4320 > th dose dependent rect. 17 17
223 171.62 humidity 90 1440 < th dose dependent rect. 24 7
242 172.72 temperature 20 1440 < th dose independent rect. 18 3
272 173.69 wind 7 4320 < th dose independent rect. 18 16
288 174.24 temperature 20 1440 > th dose independent rect. 13 8
325 174.51 atmosphere 995 14400 > th dose independent rect. 8 12
359 174.96 temperature 20 4320 < th dose independent rect. 21 1
361 174.97 temperature 20 720 < th dose independent rect. 8 12
364 174.98 wind 7 4320 > th dose independent rect. 18 16
387 175.36 humidity 90 1440 < th dose dependent rect. 5 1
388 175.52 wind 5 4320 > th dose dependent sin 12 NA
478 176.89 temperature 20 1440 > th dose independent rect. 10 11
482 176.95 temperature 20 4320 > th dose independent rect. 20 2
513 177.68 wind 7 1440 > th dose independent rect. 8 1
582 178.68 wind 7 1440 < th dose independent rect. 8 1
645 179.30 wind 7 4320 < th dose independent sin 12 NA
707 179.87 humidity 80 1440 < th dose dependent rect. 22 1
716 179.95 atmosphere 995 14400 > th dose independent sin 22 NA
717 179.95 radiation 1 14400 < th dose dependent rect. 21 4
722 180.01 atmosphere 995 14400 < th dose independent sin 22 NA
770 180.46 atmosphere 995 14400 < th dose dependent sin 23 NA
772 180.49 atmosphere 995 14400 > th dose independent sin 3 NA
798 180.64 humidity 80 1440 > th dose independent rect. 22 1
803 180.68 humidity 80 270 < th dose independent rect. 21 10
815 180.82 atmosphere 995 14400 < th dose independent sin 3 NA
857 180.93 humidity 80 270 < th dose dependent rect. 21 10
892 181.14 wind 7 4320 > th dose independent sin 12 NA
945 181.37 humidity 80 1440 > th dose independent rect. 22 4