Os01g0788500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Disease resistance gene analog PIC21 (Fragment).
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Os01g0788500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Disease resistance gene analog PIC21 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48 | 0.326 | 10.2 | 1.85 | 0.852 | 0.4 | -0.0277 | -0.828 | 0.521 | 20.5 | 20.4 | 465 | -- | -- |
| 49.86 | 0.329 | 10.1 | 1.97 | 0.837 | 0.512 | -0.301 | -- | 0.548 | 20.4 | 20.29 | 518 | -- | -- |
| 47.98 | 0.323 | 10.2 | 1.85 | 0.85 | 0.394 | -- | -0.833 | 0.516 | 20.4 | 20.5 | 483 | -- | -- |
| 49.62 | 0.328 | 10.1 | 1.96 | 0.833 | 0.607 | -- | -- | 0.554 | 20.5 | 19.43 | 475 | -- | -- |
| 83.16 | 0.425 | 10.1 | 2.06 | -- | 0.592 | -- | -0.269 | 0.446 | -- | 25.2 | 604 | -- | -- |
| 57.16 | 0.354 | 10.1 | 2.16 | 0.897 | -- | -0.233 | -- | 0.654 | 20.4 | -- | -- | -- | -- |
| 57.33 | 0.355 | 10.1 | 2.17 | 0.897 | -- | -- | -- | 0.654 | 20.4 | -- | -- | -- | -- |
| 83.15 | 0.425 | 10.1 | 1.98 | -- | 0.619 | -- | -- | 0.413 | -- | 25.2 | 619 | -- | -- |
| 62.3 | 0.368 | 10.3 | -- | 0.889 | 1.79 | -- | -- | 0.0143 | 20.3 | 17.96 | 47520 | -- | -- |
| 102.12 | 0.472 | 10.1 | 2.16 | -- | -- | -- | -- | 0.645 | -- | -- | -- | -- | -- |
| 180.93 | 0.629 | 10.2 | -- | 0.888 | -- | -- | -- | 0.413 | 20.6 | -- | -- | -- | -- |
| 106.04 | 0.48 | 10.2 | -- | -- | 1.77 | -- | -- | 0.00157 | -- | 18.07 | 47520 | -- | -- |
| 225.27 | 0.701 | 10.1 | -- | -- | -- | -- | -- | 0.405 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.56 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 23 |
| 3 | 47.93 | temperature | 20 | 10 | > th | dose independent | sin | 6 | NA |
| 4 | 47.94 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 17 |
| 5 | 47.96 | temperature | 20 | 270 | > th | dose independent | sin | 8 | NA |
| 11 | 48.06 | temperature | 20 | 270 | < th | dose independent | sin | 8 | NA |
| 15 | 48.10 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 22 |
| 27 | 48.28 | temperature | 20 | 10 | < th | dose independent | sin | 6 | NA |
| 28 | 48.28 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 12 |
| 30 | 48.28 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 11 |
| 32 | 48.29 | temperature | 20 | 30 | > th | dose independent | rect. | 23 | 19 |
| 36 | 48.31 | temperature | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 44 | 48.36 | temperature | 20 | 720 | < th | dose independent | rect. | 19 | 10 |
| 50 | 48.40 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 14 |
| 85 | 48.53 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 16 |
| 114 | 48.62 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 123 | 48.65 | temperature | 20 | 720 | < th | dose independent | rect. | 16 | 18 |
| 133 | 48.67 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 13 |
| 167 | 48.76 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 20 |
| 178 | 48.78 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 21 |
| 179 | 48.78 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 23 |
| 183 | 48.79 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 19 |
| 187 | 48.79 | temperature | 25 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 220 | 48.86 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 17 |
| 234 | 48.88 | temperature | 20 | 720 | > th | dose independent | sin | 11 | NA |
| 252 | 48.90 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 6 |
| 395 | 49.07 | temperature | 20 | 10 | < th | dose independent | rect. | 21 | 15 |
| 405 | 49.08 | temperature | 20 | 720 | > th | dose independent | rect. | 8 | 23 |
| 428 | 49.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 436 | 49.12 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 458 | 49.13 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 11 |
| 467 | 49.15 | humidity | 90 | 14400 | > th | dose independent | sin | 3 | NA |
| 483 | 49.16 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 23 |
| 486 | 49.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 489 | 49.18 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 492 | 49.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 493 | 49.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 528 | 49.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 544 | 49.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 9 |
| 546 | 49.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 570 | 49.26 | temperature | 20 | 4320 | > th | dose independent | rect. | 7 | 14 |
| 596 | 49.29 | humidity | 90 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 611 | 49.29 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 612 | 49.30 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 9 |
| 630 | 49.31 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 631 | 49.31 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 646 | 49.33 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 651 | 49.33 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 13 |
| 680 | 49.36 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 22 |
| 682 | 49.36 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 23 |
| 684 | 49.37 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 685 | 49.37 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 2 |
| 703 | 49.38 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 16 |
| 746 | 49.41 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 747 | 49.41 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 23 |
| 752 | 49.41 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 778 | 49.43 | wind | 1 | 43200 | < th | dose dependent | rect. | 5 | 21 |
| 784 | 49.45 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 813 | 49.47 | temperature | 20 | 4320 | < th | dose independent | rect. | 7 | 15 |
| 816 | 49.48 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 818 | 49.48 | temperature | 20 | 4320 | < th | dose independent | rect. | 7 | 13 |
| 854 | 49.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 855 | 49.51 | humidity | 90 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 880 | 49.52 | temperature | 15 | 270 | > th | dose dependent | sin | 7 | NA |
| 946 | 49.57 | humidity | 90 | 14400 | < th | dose independent | sin | 4 | NA |
| 958 | 49.58 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 1 |
| 960 | 49.58 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 4 |