Os01g0787000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Peroxidase (EC 1.11.1.7).
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Os01g0787000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Peroxidase (EC 1.11.1.7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 204.19 | 0.671 | 8.11 | -0.083 | 0.00248 | -1.35 | 0.782 | -3.55 | -0.225 | 9.78 | 20.4 | 10 | -- | -- |
| 210.86 | 0.676 | 8.05 | 0.427 | 0.165 | -1.6 | -0.73 | -- | -0.094 | 16.9 | 23.46 | 14 | -- | -- |
| 205.99 | 0.674 | 8.09 | 0.0678 | 0.11 | -1.49 | -- | -2.97 | -0.178 | 15.3 | 20.4 | 9 | -- | -- |
| 212.1 | 0.678 | 8.04 | 0.55 | 0.196 | -1.67 | -- | -- | -0.0548 | 16.4 | 23.06 | 14 | -- | -- |
| 206.18 | 0.669 | 8.09 | 0.0447 | -- | -1.38 | -- | -2.96 | -0.194 | -- | 20.4 | 10 | -- | -- |
| 253.12 | 0.746 | 8.09 | 0.25 | 0.481 | -- | 1.06 | -- | -0.303 | 2.81 | -- | -- | -- | -- |
| 256.71 | 0.75 | 8.1 | 0.226 | 0.483 | -- | -- | -- | -0.309 | 2.26 | -- | -- | -- | -- |
| 213.55 | 0.681 | 8.04 | 0.512 | -- | -1.52 | -- | -- | -0.0806 | -- | 22.9 | 12 | -- | -- |
| 219.3 | 0.69 | 8.06 | -- | 0.15 | -1.53 | -- | -- | -0.154 | 16.9 | 23.58 | 14 | -- | -- |
| 270.59 | 0.769 | 8.09 | 0.246 | -- | -- | -- | -- | -0.297 | -- | -- | -- | -- | -- |
| 258.05 | 0.751 | 8.1 | -- | 0.487 | -- | -- | -- | -0.334 | 2.27 | -- | -- | -- | -- |
| 220.13 | 0.691 | 8.06 | -- | -- | -1.42 | -- | -- | -0.164 | -- | 23.44 | 12 | -- | -- |
| 272.18 | 0.77 | 8.1 | -- | -- | -- | -- | -- | -0.325 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 199.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 2 | 199.62 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 7 | 200.59 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 22 |
| 27 | 202.51 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 31 | 202.87 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 18 |
| 42 | 203.24 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 53 | 203.59 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 57 | 203.72 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 58 | 203.80 | radiation | 10 | 4320 | > th | dose independent | rect. | 16 | 2 |
| 84 | 204.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 87 | 204.21 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 95 | 204.29 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 105 | 204.49 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 112 | 204.63 | temperature | 10 | 10 | > th | dose dependent | sin | 0 | NA |
| 119 | 204.71 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 124 | 204.82 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 4 |
| 125 | 204.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 132 | 204.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 135 | 205.02 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 144 | 205.09 | temperature | 20 | 90 | > th | dose dependent | sin | 2 | NA |
| 147 | 205.18 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 154 | 205.28 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 2 |
| 155 | 205.29 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 181 | 205.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 197 | 205.56 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 202 | 205.66 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 204 | 205.67 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 23 |
| 227 | 205.85 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 231 | 205.90 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 234 | 205.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 235 | 205.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 238 | 205.97 | temperature | 25 | 720 | > th | dose independent | rect. | 2 | 10 |
| 278 | 206.13 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 294 | 206.22 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 302 | 206.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 317 | 206.40 | temperature | 25 | 90 | > th | dose independent | sin | 22 | NA |
| 321 | 206.42 | temperature | 20 | 270 | > th | dose dependent | sin | 5 | NA |
| 322 | 206.42 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 352 | 206.64 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 373 | 206.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 376 | 206.77 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 9 |
| 384 | 206.81 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 426 | 207.04 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 427 | 207.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 438 | 207.16 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 23 |
| 442 | 207.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 447 | 207.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 456 | 207.30 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 462 | 207.34 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 484 | 207.48 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 486 | 207.49 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 8 |
| 528 | 207.67 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 532 | 207.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 9 |
| 542 | 207.77 | temperature | 25 | 10 | < th | dose independent | rect. | 5 | 17 |
| 623 | 208.20 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 630 | 208.22 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 683 | 208.41 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 6 |
| 686 | 208.42 | temperature | 25 | 10 | < th | dose independent | sin | 22 | NA |
| 697 | 208.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 709 | 208.48 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 733 | 208.56 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 8 |
| 751 | 208.60 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 779 | 208.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 827 | 208.85 | temperature | 25 | 10 | < th | dose independent | rect. | 5 | 15 |