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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0786000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.79 (0.0232) R2 : 0.023
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.16 (0.0489) R2dN8 : 0.0296 R2N8 : 0.023
σ : 0.437
deviance : 87.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.32 0.371 2.83 0.293 0.15 2.55 -0.193 16.4 0.0655 7.11 90 30 2 1
74.38 0.405 2.81 0.0373 0.154 1.24 -0.0979 -- 0.0657 6.93 90 30 2 1
63.42 0.371 2.83 0.293 0.15 2.55 -- 16.4 0.0655 7.11 90 30 2 1
74.28 0.401 2.81 0.0343 0.151 1.24 -- -- 0.0698 7 90 30 2 1.21
64.61 0.374 2.83 0.293 -- 2.55 -- 16.4 0.0655 -- 90 30 2 1
85.32 0.433 2.79 0.0345 0.215 -- -0.0978 -- 0.159 5.59 -- -- -- --
85.35 0.433 2.79 0.0339 0.215 -- -- -- 0.159 5.5 -- -- -- --
75.47 0.405 2.81 0.0373 -- 1.28 -- -- 0.0697 -- 90 29 1.98 1.13
74.31 0.401 2.81 -- 0.151 1.24 -- -- 0.0656 6.98 90.04 29 1.99 1.21
87.74 0.438 2.79 0.041 -- -- -- -- 0.165 -- -- -- -- --
85.38 0.432 2.79 -- 0.215 -- -- -- 0.156 5.49 -- -- -- --
75.5 0.405 2.81 -- -- 1.28 -- -- 0.0657 -- 89.59 30 1.97 1.2
87.79 0.437 2.79 -- -- -- -- -- 0.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 63.32 humidity 90.0 30 > th dose independent rect. 2 1
2 63.36 temperature 20.0 30 > th dose independent rect. 2 1
3 63.40 atmosphere 1015.0 30 < th dose dependent rect. 2 1
5 63.55 temperature 25.0 30 < th dose independent rect. 2 1
7 63.58 atmosphere 1000.0 30 > th dose independent rect. 2 1
8 63.62 humidity 70.0 30 > th dose dependent rect. 2 1
10 63.64 temperature 30.0 30 < th dose dependent rect. 2 1
13 63.68 wind 5.0 30 < th dose independent rect. 2 1
16 63.68 temperature 10.0 30 > th dose independent rect. 2 1
19 63.68 humidity 50.0 30 > th dose independent rect. 2 1
23 63.68 atmosphere 1010.0 30 < th dose independent rect. 2 1
25 63.68 radiation 1.0 30 < th dose independent rect. 2 1
30 63.68 precipitation 0.1 30 < th dose independent rect. 2 1
31 63.68 temperature 10.0 30 > th dose independent rect. 3 23
32 63.68 radiation 1.0 30 < th dose dependent rect. 2 1
37 63.68 precipitation 0.1 30 < th dose dependent rect. 2 1
38 63.84 wind 1.0 30 > th dose independent rect. 2 1
39 63.84 temperature 10.0 30 > th dose dependent rect. 2 1
42 63.99 wind 9.0 30 < th dose dependent rect. 2 1
43 64.03 atmosphere 995.0 30 > th dose dependent rect. 2 1
96 66.93 wind 9.0 30 < th dose independent rect. 3 23
107 70.63 wind 1.0 30 > th dose dependent rect. 2 1
115 75.58 wind 7.0 90 > th dose dependent rect. 24 10
118 76.14 precipitation 0.1 30 < th dose independent rect. 3 23
119 76.14 precipitation 0.1 30 < th dose dependent rect. 3 23
121 76.53 atmosphere 995.0 30 > th dose independent rect. 3 23
126 77.34 wind 7.0 90 > th dose independent rect. 24 10
131 77.56 atmosphere 1015.0 1440 < th dose independent rect. 3 1
136 77.96 wind 9.0 30 < th dose dependent rect. 3 23
143 78.46 atmosphere 1015.0 30 < th dose independent rect. 3 23
149 78.77 temperature 15.0 1440 > th dose independent rect. 3 1
158 79.00 radiation 10.0 4320 < th dose dependent rect. 3 1
170 79.01 wind 9.0 1440 < th dose independent rect. 3 1
174 79.01 temperature 30.0 1440 < th dose independent rect. 3 1
178 79.01 humidity 50.0 1440 > th dose independent rect. 3 1
187 79.01 atmosphere 995.0 1440 > th dose independent rect. 3 1
188 79.01 radiation 1.0 1440 < th dose independent rect. 3 1
208 79.01 temperature 10.0 1440 > th dose independent rect. 4 23
222 79.15 humidity 50.0 30 > th dose independent rect. 3 23
245 79.55 temperature 25.0 270 > th dose independent rect. 23 8
246 79.58 humidity 80.0 4320 < th dose dependent rect. 1 1
249 79.61 wind 5.0 10 > th dose independent rect. 10 1
257 79.61 wind 5.0 10 > th dose dependent rect. 10 1
265 79.62 humidity 60.0 10 < th dose independent rect. 10 1
270 79.62 humidity 60.0 10 < th dose dependent rect. 10 1
434 80.02 humidity 90.0 90 < th dose independent rect. 2 1
511 80.26 wind 7.0 90 > th dose independent rect. 24 8
513 80.27 wind 7.0 90 > th dose independent rect. 24 5
527 80.29 wind 7.0 90 > th dose dependent rect. 24 4
533 80.31 wind 5.0 90 > th dose independent rect. 1 1
538 80.31 wind 5.0 90 > th dose dependent rect. 1 1
550 80.33 precipitation 0.1 270 > th dose independent rect. 22 1
552 80.33 precipitation 0.1 270 > th dose dependent rect. 22 1
669 80.50 atmosphere 1015.0 720 < th dose independent rect. 3 16
723 80.69 temperature 15.0 720 > th dose independent rect. 7 8
744 80.78 temperature 25.0 270 > th dose dependent rect. 23 8
772 80.84 humidity 80.0 4320 < th dose independent rect. 23 4
779 80.86 humidity 80.0 4320 < th dose independent rect. 1 1
781 80.87 temperature 15.0 720 > th dose independent rect. 3 12
786 80.88 temperature 15.0 720 > th dose independent rect. 3 16
787 80.90 humidity 80.0 4320 > th dose independent rect. 1 1
794 80.93 humidity 80.0 4320 > th dose independent rect. 23 4
797 80.95 temperature 25.0 1440 < th dose independent rect. 1 1
832 81.12 temperature 15.0 720 > th dose independent rect. 15 16
841 81.15 temperature 25.0 90 > th dose dependent rect. 1 5
843 81.15 temperature 10.0 30 > th dose dependent rect. 3 23
876 81.22 wind 1.0 10 < th dose independent rect. 22 5
963 81.38 wind 3.0 720 < th dose dependent rect. 2 1
992 81.46 wind 1.0 10 < th dose independent rect. 11 16