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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0782500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phospholipid/glycerol acyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.1 (0.0206) R2 : 0.513
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.615 (0.0537) R2dC : 0.149 R2C : 0.187
β3 : -4.71 (0.273) R2dE : 0.306 R2E : 0.355
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.162 (0.0433) R2dN8 : 0.0147 R2N8 : 0.0137
σ : 0.386
deviance : 68.67
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_____
C
peak time of C : 19.2
E
wheather : radiation
threshold : 4.855
memory length : 10
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 4.47
open length of G : 1.35

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.16 0.396 12.1 0.508 0.594 -2.87 0.258 -4.12 0.183 19.3 1.824 11 4.48 1.34
63.49 0.374 12.1 0.547 0.634 -4.32 0.299 -- 0.196 19.2 4.42 11 4.45 1.36
62.95 0.372 680 -6050 0.629 120000 -- -1090000 0.203 19.1 4.64 8 4.55 1.3
61.19 0.364 12.1 0.541 0.634 -4.53 -- -- 0.19 19.2 4.643 10 4.47 1.35
150164.2 18 680 -6050 -- 120000 -- -1090000 36.7 -- 4.22 8 4.52 1.18
103.72 0.477 12.1 0.516 0.733 -- 0.485 -- 0.226 19 -- -- -- --
104.32 0.478 12.1 0.507 0.735 -- -- -- 0.228 19 -- -- -- --
82.33 0.423 12.1 0.518 -- -5.06 -- -- 0.184 -- 4.764 12 4.45 1.33
68.67 0.386 12.1 -- 0.615 -4.71 -- -- 0.162 19.2 4.855 10 4.47 1.35
132.68 0.538 12 0.492 -- -- -- -- 0.214 -- -- -- -- --
111.1 0.493 12.1 -- 0.729 -- -- -- 0.171 19 -- -- -- --
89.35 0.44 12.1 -- -- -4.92 -- -- 0.124 -- 4.755 11 4.37 1.44
139.06 0.55 12 -- -- -- -- -- 0.159 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 91.45 radiation 1.0 10 > th dose dependent rect. 5 1
25 93.41 wind 7.0 1440 < th dose independent rect. 5 1
27 93.41 temperature 10.0 1440 > th dose independent rect. 5 1
30 93.41 temperature 30.0 1440 < th dose independent rect. 5 1
34 93.41 humidity 50.0 1440 > th dose independent rect. 5 1
43 93.41 atmosphere 995.0 1440 > th dose independent rect. 5 1
44 93.41 atmosphere 1015.0 1440 < th dose independent rect. 5 1
45 93.41 radiation 20.0 1440 < th dose independent rect. 5 1
54 93.41 temperature 10.0 1440 > th dose independent rect. 6 23
57 94.57 wind 1.0 30 < th dose independent rect. 5 1
58 94.69 wind 1.0 270 < th dose dependent rect. 4 1
59 94.85 wind 1.0 270 < th dose independent rect. 4 1
60 95.01 wind 1.0 30 < th dose independent rect. 5 3
63 95.07 wind 1.0 30 < th dose independent rect. 5 7
67 95.12 temperature 20.0 30 > th dose dependent rect. 5 1
91 96.66 temperature 20.0 30 > th dose independent rect. 5 1
95 96.77 radiation 1.0 30 > th dose independent rect. 5 1
110 96.88 wind 3.0 30 < th dose dependent rect. 5 1
112 96.90 wind 1.0 90 < th dose independent rect. 4 17
114 96.92 wind 1.0 90 < th dose independent rect. 4 14
120 96.95 wind 1.0 90 < th dose dependent rect. 4 7
138 97.07 wind 1.0 90 < th dose dependent rect. 4 4
144 97.16 wind 1.0 90 < th dose dependent rect. 4 17
146 97.19 wind 1.0 90 < th dose dependent rect. 4 14
151 97.21 atmosphere 1005.0 30 > th dose independent rect. 5 1
159 97.28 wind 1.0 90 > th dose independent sin 3 NA
172 97.47 wind 1.0 90 < th dose dependent rect. 4 21
189 97.64 radiation 1.0 30 < th dose independent rect. 23 17
193 97.72 wind 1.0 90 < th dose independent rect. 4 21
194 97.73 radiation 1.0 30 < th dose independent rect. 23 15
209 97.77 radiation 1.0 30 < th dose independent rect. 23 13
212 97.79 radiation 1.0 30 < th dose independent rect. 23 9
255 98.09 wind 1.0 90 > th dose independent rect. 23 17
257 98.10 temperature 20.0 30 > th dose independent rect. 5 18
261 98.11 radiation 10.0 10 < th dose dependent rect. 23 17
262 98.12 wind 1.0 90 < th dose independent sin 4 NA
275 98.21 humidity 90.0 10 > th dose independent rect. 5 1
280 98.24 wind 1.0 90 > th dose independent rect. 23 9
284 98.26 radiation 1.0 30 > th dose independent sin 8 NA
291 98.28 radiation 10.0 10 < th dose dependent rect. 23 15
300 98.35 radiation 1.0 30 < th dose independent sin 8 NA
301 98.35 humidity 90.0 10 > th dose dependent rect. 5 1
306 98.36 radiation 10.0 10 < th dose dependent rect. 23 12
315 98.39 wind 1.0 90 > th dose independent rect. 21 23
348 98.48 radiation 1.0 30 < th dose dependent rect. 23 9
372 98.60 wind 1.0 90 > th dose independent rect. 1 15
402 98.68 wind 1.0 90 < th dose dependent sin 3 NA
438 98.78 radiation 1.0 30 < th dose dependent rect. 23 7
467 98.86 wind 1.0 90 > th dose independent rect. 3 13
469 98.86 radiation 10.0 10 < th dose dependent sin 9 NA
532 99.05 wind 7.0 10 < th dose independent rect. 6 23
609 99.24 radiation 10.0 10 < th dose independent rect. 5 1
633 99.29 atmosphere 995.0 10 > th dose dependent rect. 5 1
638 99.30 precipitation 0.1 10 < th dose independent rect. 5 1
641 99.30 precipitation 0.1 10 < th dose dependent rect. 5 1
651 99.32 temperature 10.0 10 > th dose independent rect. 5 1
653 99.32 temperature 30.0 10 < th dose independent rect. 5 1
654 99.32 humidity 50.0 10 > th dose independent rect. 5 1
658 99.32 atmosphere 1010.0 10 < th dose independent rect. 5 1
665 99.32 temperature 10.0 10 > th dose independent rect. 6 23
754 99.45 wind 7.0 30 < th dose independent rect. 23 6
756 99.45 temperature 10.0 30 > th dose independent rect. 23 6
757 99.45 temperature 30.0 30 < th dose independent rect. 23 6
758 99.45 humidity 50.0 30 > th dose independent rect. 23 6
761 99.45 atmosphere 995.0 30 > th dose independent rect. 23 6
767 99.45 temperature 10.0 30 > th dose independent rect. 5 18
769 99.45 atmosphere 1015.0 30 < th dose independent rect. 5 18
781 99.46 precipitation 0.1 30 < th dose independent rect. 6 23
786 99.46 precipitation 0.1 30 < th dose dependent rect. 6 23
805 99.50 precipitation 0.1 10 < th dose independent rect. 5 18
807 99.50 precipitation 0.1 10 < th dose dependent rect. 5 18
808 99.51 wind 1.0 90 > th dose independent no NA NA
809 99.51 wind 9.0 30 < th dose independent rect. 5 18
826 99.52 humidity 50.0 30 > th dose dependent rect. 23 6
832 99.53 wind 1.0 90 > th dose independent rect. 9 23
841 99.55 precipitation 0.1 30 < th dose independent rect. 23 6
845 99.55 precipitation 0.1 30 < th dose dependent rect. 23 6
876 99.63 wind 9.0 30 < th dose dependent rect. 5 18
880 99.64 atmosphere 995.0 30 > th dose independent rect. 5 18
887 99.66 humidity 50.0 1440 < th dose independent rect. 16 1
889 99.66 temperature 25.0 270 < th dose independent rect. 1 10
916 99.68 temperature 30.0 720 > th dose dependent rect. 18 1
937 99.69 humidity 50.0 1440 < th dose dependent rect. 16 1
940 99.70 temperature 20.0 30 > th dose independent rect. 5 8
948 99.70 radiation 20.0 1440 < th dose dependent rect. 24 5
955 99.71 radiation 40.0 10 < th dose dependent rect. 6 23
967 99.73 wind 1.0 90 < th dose independent rect. 17 18
975 99.74 wind 1.0 90 < th dose independent rect. 7 23
980 99.75 wind 1.0 90 < th dose independent rect. 20 15
983 99.75 temperature 30.0 30 < th dose independent rect. 5 18