Os01g0781000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Vacuolar protein sorting-associated, VPS28 family protein.
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Os01g0781000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Vacuolar protein sorting-associated, VPS28 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.51 | 0.255 | 11.3 | -0.059 | 0.685 | -0.607 | 0.212 | -0.747 | -0.0122 | 2.43 | 24.96 | 85 | -- | -- |
| 30.28 | 0.258 | 11.3 | -0.164 | 0.677 | -0.52 | -0.0264 | -- | -0.0311 | 2.38 | 24.96 | 85 | -- | -- |
| 29.63 | 0.254 | 11.3 | -0.086 | 0.679 | -0.587 | -- | -0.598 | -0.0151 | 2.46 | 24.92 | 85 | -- | -- |
| 30.21 | 0.256 | 11.3 | -0.166 | 0.671 | -0.516 | -- | -- | -0.036 | 2.47 | 25 | 80 | -- | -- |
| 46.69 | 0.318 | 11.3 | -0.0998 | -- | -0.684 | -- | -0.569 | -0.0342 | -- | 27.7 | 1072 | -- | -- |
| 34.32 | 0.275 | 11.3 | -0.0429 | 0.578 | -- | -0.0502 | -- | 0.0699 | 2.59 | -- | -- | -- | -- |
| 34.33 | 0.274 | 11.3 | -0.0416 | 0.578 | -- | -- | -- | 0.0702 | 2.57 | -- | -- | -- | -- |
| 46.99 | 0.319 | 11.3 | -0.222 | -- | -0.665 | -- | -- | -0.0567 | -- | 29.73 | 1099 | -- | -- |
| 30.91 | 0.259 | 11.3 | -- | 0.663 | -0.468 | -- | -- | -0.0129 | 2.55 | 25 | 74 | -- | -- |
| 53.9 | 0.343 | 11.3 | -0.0171 | -- | -- | -- | -- | 0.0847 | -- | -- | -- | -- | -- |
| 34.37 | 0.274 | 11.3 | -- | 0.577 | -- | -- | -- | 0.0748 | 2.57 | -- | -- | -- | -- |
| 48.03 | 0.323 | 11.3 | -- | -- | -0.56 | -- | -- | -0.00968 | -- | 30.4 | 1084 | -- | -- |
| 53.9 | 0.343 | 11.3 | -- | -- | -- | -- | -- | 0.0866 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.25 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 11 |
| 3 | 27.72 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 14 |
| 7 | 28.16 | temperature | 15 | 30 | > th | dose dependent | rect. | 18 | 11 |
| 11 | 28.25 | temperature | 15 | 270 | > th | dose dependent | sin | 12 | NA |
| 16 | 28.47 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 4 |
| 24 | 28.55 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 14 |
| 26 | 28.57 | temperature | 30 | 270 | < th | dose dependent | sin | 12 | NA |
| 32 | 28.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 33 | 28.63 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 19 |
| 38 | 28.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 3 |
| 50 | 28.71 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 17 |
| 66 | 28.80 | temperature | 25 | 90 | > th | dose independent | rect. | 2 | 3 |
| 86 | 28.85 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 22 |
| 99 | 28.87 | wind | 1 | 10 | > th | dose dependent | rect. | 4 | 1 |
| 100 | 28.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 2 |
| 127 | 28.92 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 12 |
| 136 | 28.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 15 |
| 141 | 28.94 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 23 |
| 147 | 28.95 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 23 |
| 263 | 29.13 | temperature | 25 | 10 | > th | dose independent | rect. | 1 | 4 |
| 271 | 29.14 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 1 |
| 282 | 29.15 | temperature | 25 | 90 | > th | dose independent | rect. | 4 | 1 |
| 413 | 29.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 442 | 29.35 | temperature | 20 | 10 | > th | dose independent | rect. | 10 | 19 |
| 451 | 29.36 | wind | 1 | 10 | > th | dose independent | rect. | 4 | 1 |
| 493 | 29.40 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 498 | 29.42 | humidity | 90 | 10 | < th | dose independent | rect. | 4 | 1 |
| 529 | 29.44 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 570 | 29.47 | temperature | 25 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 573 | 29.48 | temperature | 20 | 90 | > th | dose independent | sin | 13 | NA |
| 586 | 29.49 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 6 |
| 608 | 29.51 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 629 | 29.53 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 9 |
| 643 | 29.53 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 677 | 29.56 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 706 | 29.58 | temperature | 25 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 708 | 29.58 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 717 | 29.60 | wind | 7 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 719 | 29.60 | temperature | 10 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 722 | 29.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 726 | 29.60 | humidity | 50 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 735 | 29.60 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 736 | 29.60 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 737 | 29.60 | radiation | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 747 | 29.60 | temperature | 10 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 790 | 29.63 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 1 |
| 800 | 29.63 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 801 | 29.63 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 809 | 29.64 | temperature | 25 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 813 | 29.65 | temperature | 20 | 90 | < th | dose independent | rect. | 14 | 15 |
| 856 | 29.68 | temperature | 20 | 90 | < th | dose independent | rect. | 18 | 11 |
| 904 | 29.73 | temperature | 20 | 270 | < th | dose independent | sin | 14 | NA |
| 981 | 29.78 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |