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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0779800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.61 (0.0461) R2 : 0.321
β1 : -0.893 (0.169) R2dD : 0.0462 R2D : 0.0221
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.55 (0.234) R2dE : 0.304 R2E : 0.265
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.162 (0.0988) R2dN8 : 0.00398 R2N8 : -0.00169
σ : 0.862
deviance : 342.22
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 0.8
memory length : 86
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.02
open length of G : 0.933

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
325.11 0.847 3.66 -1.23 0.487 3.82 0.0318 -8.28 0.1 7.49 0.8875 97 3.98 0.969
342.67 0.862 3.65 -1 0.513 3.84 0.0574 -- 0.126 7.46 0.7975 79 4 0.984
325.11 0.84 3.66 -1.23 0.487 3.82 -- -8.26 0.1 7.49 0.8875 97 3.98 0.969
338.64 0.857 3.63 -0.855 0.535 3.33 -- -- 0.0948 7 0.6989 94 4 1
336.25 0.854 3.68 -1.2 -- 3.83 -- -7.54 0.15 -- 0.9401 105 4 0.8
435.24 0.978 3.64 -0.743 0.969 -- 1.54 -- -0.045 5.99 -- -- -- --
440.5 0.983 3.64 -0.727 0.982 -- -- -- -0.0495 6.37 -- -- -- --
342.22 0.862 3.61 -0.893 -- 3.55 -- -- 0.162 -- 0.8 86 4.02 0.933
355.07 0.878 3.64 -- 0.521 2.73 -- -- 0.105 7.19 0.7391 88 4.15 0.823
490.53 1.03 3.66 -0.701 -- -- -- -- -0.0286 -- -- -- -- --
454.43 0.997 3.62 -- 0.972 -- -- -- 0.0315 6.41 -- -- -- --
362.02 0.886 3.61 -- -- 3 -- -- 0.21 -- 0.9198 94 3.93 0.967
503.51 1.05 3.64 -- -- -- -- -- 0.0492 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 325.87 wind 1 90 < th dose dependent rect. 4 1
2 326.57 temperature 25 720 > th dose dependent rect. 21 1
3 327.19 wind 1 90 < th dose independent rect. 4 1
5 329.37 temperature 25 720 > th dose dependent rect. 19 4
13 334.08 temperature 30 720 > th dose dependent rect. 18 1
28 335.58 humidity 70 720 < th dose independent rect. 19 12
29 335.59 humidity 70 720 < th dose independent rect. 19 1
42 336.98 humidity 70 720 < th dose dependent rect. 19 12
43 337.01 humidity 70 720 < th dose dependent rect. 19 1
56 338.88 humidity 50 1440 < th dose independent rect. 16 1
59 339.38 humidity 50 1440 < th dose dependent rect. 16 1
113 345.87 humidity 50 1440 > th dose independent rect. 16 1
116 347.20 temperature 30 720 > th dose independent rect. 18 1
155 349.64 radiation 20 14400 < th dose independent rect. 5 1
159 350.04 radiation 1 720 > th dose dependent rect. 18 11
160 350.08 humidity 70 720 > th dose independent rect. 18 8
232 353.21 humidity 90 90 > th dose independent rect. 4 1
233 353.21 temperature 20 90 > th dose dependent rect. 4 1
234 353.26 radiation 1 720 > th dose dependent rect. 18 1
248 353.50 humidity 90 90 > th dose dependent rect. 4 1
249 353.54 radiation 1 720 > th dose independent rect. 18 11
251 353.65 humidity 70 1440 > th dose independent rect. 19 6
253 353.70 humidity 70 1440 > th dose independent rect. 19 1
257 353.84 humidity 70 1440 > th dose independent rect. 19 3
262 354.06 temperature 20 90 > th dose independent rect. 4 1
263 354.10 humidity 70 1440 > th dose independent rect. 19 12
271 355.66 radiation 1 720 > th dose independent rect. 18 1
342 357.47 temperature 30 1440 < th dose independent rect. 18 11
345 357.68 temperature 30 1440 < th dose independent rect. 18 9
348 357.93 temperature 30 1440 < th dose independent rect. 18 13
349 357.94 temperature 30 1440 < th dose independent rect. 18 7
352 358.03 humidity 60 1440 > th dose independent rect. 18 14
363 358.58 temperature 30 1440 < th dose independent rect. 18 2
364 358.69 temperature 25 720 < th dose independent rect. 21 2
367 358.78 temperature 30 1440 < th dose independent rect. 18 4
462 360.22 radiation 30 14400 < th dose independent rect. 16 2
464 360.41 radiation 30 14400 < th dose independent rect. 16 4
465 360.44 temperature 25 90 < th dose independent rect. 4 1
467 360.53 radiation 30 14400 < th dose independent rect. 16 13
468 360.62 radiation 30 14400 < th dose independent rect. 16 11
500 361.15 radiation 30 14400 < th dose independent rect. 16 9
501 361.16 radiation 30 14400 < th dose independent rect. 16 6
525 361.87 radiation 1 1440 < th dose independent rect. 18 9
531 362.17 radiation 1 1440 < th dose independent rect. 18 2
537 362.31 radiation 1 1440 < th dose independent rect. 18 7
556 362.69 radiation 20 14400 < th dose independent rect. 3 3
560 362.77 radiation 1 1440 < th dose independent rect. 18 4
620 364.13 wind 3 10 < th dose dependent rect. 4 2
657 365.06 wind 1 90 < th dose dependent rect. 4 7
752 366.35 atmosphere 1005 90 > th dose independent rect. 4 1
772 366.41 humidity 70 1440 < th dose dependent sin 12 NA
790 366.70 radiation 10 1440 < th dose dependent rect. 18 9
797 366.83 radiation 10 1440 < th dose dependent rect. 18 2
818 367.08 radiation 10 1440 < th dose dependent rect. 18 11
850 367.73 wind 1 90 < th dose dependent rect. 4 13
857 367.88 humidity 60 1440 < th dose independent sin 12 NA
865 367.99 temperature 30 1440 < th dose independent sin 11 NA
867 368.00 radiation 40 14400 > th dose dependent rect. 15 17
927 368.25 temperature 30 1440 > th dose dependent sin 12 NA
965 368.33 radiation 20 14400 < th dose independent rect. 18 12
979 368.71 humidity 60 1440 > th dose independent sin 12 NA
987 368.82 radiation 10 1440 < th dose dependent rect. 18 7