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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0778500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.52 (0.0583) R2 : 0.561
β1 : -3.99 (0.216) R2dD : 0.366 R2D : 0.401
β2 : 0.584 (0.14) R2dC : 0.0169 R2C : 0.0119
β3 : 1.47 (0.209) R2dE : 0.0573 R2E : 0.125
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.5 (0.737) R2dD*E : 0.0247 R2D*E : 0.0835
γ1 : -0.457 (0.131) R2dN8 : 0.0182 R2N8 : 0.0095
σ : 1.06
deviance : 522.09
__
_____
C
peak time of C : 2.44
E
wheather : wind
threshold : 3.175
memory length : 4396
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.04
open length of G : 0.92

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
522.09 1.07 4.52 -3.99 0.583 1.47 -0.0138 -3.51 -0.458 2.45 3.171 4393 8.03 0.918
547.31 1.09 4.52 -4.11 0.558 1.9 -0.0224 -- -0.46 2.36 3.163 4409 8.03 0.888
522.09 1.06 4.52 -3.99 0.584 1.47 -- -3.5 -0.457 2.44 3.175 4396 8.04 0.92
546.27 1.09 4.52 -4.14 0.584 1.83 -- -- -0.456 2.36 3.137 4402 8.1 0.8
541.76 1.08 4.52 -3.97 -- 1.52 -- -3.44 -0.456 -- 3.174 4368 8.05 0.852
624.2 1.17 4.64 -4.5 0.64 -- 0.00393 -- -0.897 2.63 -- -- -- --
624.2 1.17 4.64 -4.5 0.64 -- -- -- -0.898 2.63 -- -- -- --
564.47 1.11 4.53 -4.14 -- 1.91 -- -- -0.47 -- 3.1 4404 8.12 0.808
867 1.37 4.33 -- 0.615 1.98 -- -- -0.0104 2.96 3.999 28863 8.12 0.6
648.13 1.19 4.64 -4.48 -- -- -- -- -0.881 -- -- -- -- --
1158.9 1.59 4.53 -- 0.552 -- -- -- -0.396 2.53 -- -- -- --
775.78 1.3 4.47 -- -- 2.48 -- -- 0.204 -- 5.4 47520 7.7 0.14
1176.82 1.6 4.52 -- -- -- -- -- -0.385 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 527.42 wind 3.0 4320 > th dose independent rect. 8 1
2 531.48 wind 3.0 4320 < th dose independent rect. 8 1
3 532.60 wind 1.0 14400 < th dose independent rect. 24 4
6 534.90 wind 3.0 4320 > th dose independent rect. 5 4
7 536.12 wind 3.0 4320 < th dose independent rect. 5 4
10 537.32 wind 1.0 14400 > th dose independent rect. 24 4
12 537.65 wind 1.0 14400 < th dose dependent rect. 1 3
19 540.09 wind 3.0 4320 < th dose dependent rect. 6 1
21 540.28 wind 5.0 4320 < th dose dependent rect. 5 4
33 543.10 wind 1.0 4320 > th dose dependent rect. 8 1
34 543.26 wind 1.0 4320 > th dose dependent rect. 5 4
36 543.38 wind 7.0 4320 < th dose dependent rect. 8 1
45 544.60 wind 9.0 4320 < th dose dependent rect. 6 1
47 544.66 radiation 10.0 1440 < th dose independent rect. 15 1
74 548.90 wind 1.0 4320 > th dose dependent rect. 6 1
81 549.66 wind 3.0 4320 < th dose independent rect. 23 11
82 549.96 wind 3.0 4320 > th dose independent rect. 23 11
104 552.33 wind 3.0 4320 > th dose independent rect. 21 13
111 552.54 radiation 10.0 1440 < th dose dependent rect. 11 19
114 552.67 atmosphere 995.0 43200 > th dose independent rect. 18 16
120 552.91 atmosphere 995.0 43200 < th dose dependent sin 15 NA
127 553.36 atmosphere 995.0 43200 < th dose independent rect. 18 16
129 553.40 radiation 10.0 1440 < th dose dependent rect. 11 16
130 553.41 radiation 10.0 1440 < th dose dependent rect. 11 14
136 553.53 radiation 10.0 1440 < th dose dependent rect. 11 8
138 553.56 radiation 10.0 1440 < th dose dependent rect. 11 11
139 553.57 atmosphere 995.0 43200 > th dose independent sin 9 NA
146 553.74 humidity 90.0 14400 < th dose independent rect. 3 2
150 553.89 radiation 10.0 1440 < th dose dependent rect. 11 2
155 554.05 atmosphere 995.0 43200 < th dose independent sin 9 NA
157 554.06 atmosphere 995.0 43200 < th dose dependent rect. 13 19
158 554.23 radiation 10.0 1440 > th dose independent rect. 11 1
172 554.96 atmosphere 995.0 43200 < th dose dependent rect. 13 17
175 555.01 wind 5.0 4320 < th dose dependent rect. 23 11
177 555.03 wind 1.0 14400 < th dose dependent rect. 13 19
196 555.58 wind 1.0 14400 < th dose independent rect. 14 18
197 555.59 wind 1.0 14400 < th dose dependent rect. 22 10
205 555.85 atmosphere 995.0 43200 < th dose dependent sin 11 NA
271 557.26 atmosphere 995.0 43200 < th dose dependent rect. 15 18
291 557.95 radiation 10.0 1440 < th dose dependent sin 17 NA
328 558.63 wind 1.0 14400 < th dose independent sin 12 NA
330 558.66 wind 1.0 14400 < th dose dependent rect. 1 7
332 558.68 atmosphere 995.0 43200 > th dose independent rect. 21 13
344 558.99 atmosphere 995.0 43200 < th dose independent rect. 21 13
359 559.33 wind 3.0 4320 < th dose independent sin 7 NA
372 559.56 wind 3.0 14400 > th dose independent rect. 23 1
377 559.59 wind 3.0 14400 < th dose independent rect. 23 1
390 559.87 wind 3.0 4320 > th dose independent sin 7 NA
391 559.87 wind 1.0 14400 > th dose independent rect. 14 18
414 560.22 wind 5.0 14400 < th dose dependent rect. 22 2
427 560.36 atmosphere 995.0 43200 > th dose independent rect. 23 10
473 560.71 wind 1.0 14400 > th dose independent rect. 16 16
487 560.94 atmosphere 995.0 43200 > th dose independent rect. 3 5
508 561.16 atmosphere 995.0 43200 < th dose independent rect. 3 5
514 561.31 atmosphere 1005.0 270 > th dose independent rect. 23 9
526 561.55 radiation 40.0 43200 > th dose independent rect. 7 1
543 561.55 radiation 40.0 43200 > th dose dependent rect. 7 1
561 561.57 wind 1.0 4320 > th dose dependent rect. 23 11
570 561.70 precipitation 0.1 14400 < th dose independent rect. 11 2
571 561.70 precipitation 0.1 14400 < th dose dependent rect. 11 2
598 562.09 temperature 20.0 14400 > th dose independent rect. 16 1
602 562.16 atmosphere 995.0 43200 < th dose dependent rect. 3 5
654 563.01 precipitation 0.1 14400 > th dose independent rect. 11 2
656 563.01 precipitation 0.1 14400 > th dose dependent rect. 11 2
667 563.15 wind 1.0 14400 < th dose dependent sin 9 NA
683 563.44 radiation 10.0 1440 < th dose independent rect. 15 12
687 563.46 radiation 10.0 1440 < th dose independent rect. 15 10
692 563.48 radiation 10.0 1440 > th dose independent rect. 11 19
694 563.49 radiation 10.0 1440 > th dose independent rect. 11 7
708 563.54 temperature 20.0 14400 < th dose independent rect. 16 2
726 563.66 wind 1.0 14400 > th dose independent sin 12 NA
727 563.66 radiation 10.0 1440 < th dose independent rect. 15 7
733 563.71 wind 3.0 1440 < th dose dependent sin 6 NA
769 564.11 atmosphere 995.0 43200 < th dose dependent rect. 21 12
803 564.37 humidity 90.0 14400 > th dose independent rect. 4 1
861 564.93 wind 1.0 14400 > th dose dependent rect. 23 1
884 565.17 temperature 15.0 14400 > th dose independent rect. 8 1
889 565.19 radiation 30.0 4320 > th dose independent rect. 15 17
946 565.81 wind 1.0 14400 < th dose dependent rect. 1 17
992 566.23 wind 1.0 14400 < th dose dependent rect. 1 15
998 566.29 wind 1.0 14400 < th dose dependent rect. 22 20