Os01g0778300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0778300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 729.82 | 1.27 | 3.35 | -0.642 | 0.746 | 2.07 | -0.413 | -9.27 | -0.184 | 5.2 | 2.68 | 54 | 4.56 | 3.35 |
| 752.41 | 1.28 | 3.31 | -0.663 | 0.729 | 2.83 | -1.17 | -- | -0.151 | 5.16 | 2.803 | 52 | 4.53 | 3.28 |
| 730.22 | 1.26 | 3.35 | -0.624 | 0.733 | 1.94 | -- | -8.9 | -0.19 | 5.15 | 2.687 | 53 | 4.63 | 3.6 |
| 749.52 | 1.28 | 3.34 | -0.72 | 0.82 | 3.46 | -- | -- | -0.252 | 5.25 | 3.248 | 45 | 4.43 | 3.24 |
| 756.55 | 1.28 | 3.37 | -0.64 | -- | 2.38 | -- | -8.99 | -0.2 | -- | 2.675 | 53 | 4.65 | 3.67 |
| 776.41 | 1.31 | 3.36 | -0.69 | 0.931 | -- | -1.51 | -- | -0.222 | 5.52 | -- | -- | -- | -- |
| 781.99 | 1.31 | 3.36 | -0.695 | 0.922 | -- | -- | -- | -0.215 | 5.58 | -- | -- | -- | -- |
| 779.31 | 1.3 | 3.37 | -0.723 | -- | 4.4 | -- | -- | -0.215 | -- | 3.299 | 45 | 4.33 | 3.31 |
| 756.81 | 1.28 | 3.34 | -- | 0.751 | 4.72 | -- | -- | -0.124 | 5.54 | 3.3 | 45 | 4.4 | 3.23 |
| 826.19 | 1.34 | 3.37 | -0.665 | -- | -- | -- | -- | -0.193 | -- | -- | -- | -- | -- |
| 794.73 | 1.32 | 3.34 | -- | 0.911 | -- | -- | -- | -0.138 | 5.62 | -- | -- | -- | -- |
| 786.65 | 1.31 | 3.35 | -- | -- | 5.59 | -- | -- | -0.0912 | -- | 3.2 | 44 | 4.41 | 3.24 |
| 837.87 | 1.35 | 3.35 | -- | -- | -- | -- | -- | -0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 736.19 | wind | 3.0 | 30 | > th | dose independent | rect. | 5 | 3 |
| 7 | 738.56 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 11 | 739.00 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 18 | 739.52 | atmosphere | 1015.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 33 | 739.52 | atmosphere | 1015.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 55 | 741.68 | wind | 3.0 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 72 | 743.71 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 5 | 2 |
| 73 | 743.71 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 5 | 2 |
| 79 | 744.28 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 4 | 5 |
| 80 | 744.31 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 4 | 5 |
| 86 | 744.55 | wind | 3.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 98 | 745.00 | wind | 5.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 110 | 745.72 | temperature | 25.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 117 | 745.99 | atmosphere | 1010.0 | 270 | > th | dose independent | rect. | 5 | 1 |
| 141 | 746.55 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 162 | 747.52 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 23 | 10 |
| 163 | 747.56 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 23 | 10 |
| 173 | 747.83 | atmosphere | 1010.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 262 | 750.24 | atmosphere | 1010.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 271 | 750.34 | wind | 3.0 | 90 | > th | dose independent | rect. | 7 | 1 |
| 284 | 750.80 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 285 | 750.84 | humidity | 80.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 316 | 751.30 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 318 | 751.34 | temperature | 25.0 | 10 | < th | dose independent | rect. | 4 | 2 |
| 320 | 751.37 | humidity | 80.0 | 10 | < th | dose independent | rect. | 2 | 5 |
| 334 | 751.52 | atmosphere | 1015.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 420 | 751.81 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 7 | 4 |
| 456 | 752.04 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 523 | 752.66 | humidity | 80.0 | 720 | < th | dose independent | rect. | 21 | 1 |
| 540 | 752.91 | wind | 3.0 | 10 | > th | dose dependent | rect. | 6 | 1 |
| 571 | 753.38 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 20 | 2 |
| 603 | 753.73 | precipitation | 0.1 | 270 | > th | dose dependent | sin | 8 | NA |
| 604 | 753.74 | wind | 3.0 | 720 | < th | dose independent | rect. | 17 | 2 |
| 621 | 753.94 | precipitation | 0.1 | 270 | > th | dose independent | sin | 8 | NA |
| 657 | 754.24 | wind | 5.0 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 662 | 754.28 | wind | 1.0 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 664 | 754.30 | atmosphere | 1015.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 667 | 754.37 | precipitation | 0.1 | 270 | < th | dose independent | sin | 8 | NA |
| 668 | 754.37 | precipitation | 0.1 | 270 | < th | dose dependent | sin | 8 | NA |
| 690 | 754.58 | radiation | 20.0 | 30 | > th | dose independent | rect. | 16 | 16 |
| 709 | 754.70 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 744 | 754.85 | radiation | 20.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 763 | 754.87 | humidity | 80.0 | 1440 | < th | dose dependent | rect. | 19 | 13 |
| 814 | 755.30 | radiation | 10.0 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 819 | 755.32 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 2 | 2 |
| 825 | 755.34 | humidity | 90.0 | 90 | > th | dose dependent | rect. | 3 | 2 |
| 854 | 755.54 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 6 |
| 904 | 755.77 | wind | 5.0 | 720 | > th | dose independent | rect. | 17 | 1 |
| 916 | 755.89 | atmosphere | 1015.0 | 1440 | < th | dose independent | sin | 3 | NA |
| 952 | 756.17 | temperature | 25.0 | 270 | > th | dose independent | rect. | 14 | 10 |