Os01g0776800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0776800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.9 | 0.27 | 8.64 | 0.216 | 0.104 | -1.34 | -0.357 | 0.874 | 0.0102 | 1.68 | 19.6 | 1570 | -- | -- |
| 33.21 | 0.268 | 8.63 | 0.249 | 0.109 | -1.66 | -0.305 | -- | 0.0113 | 1.36 | 19.5 | 1572 | -- | -- |
| 33.32 | 0.269 | 8.64 | 0.226 | 0.096 | -1.28 | -- | 0.944 | 0.0132 | 0.86 | 19.69 | 1442 | -- | -- |
| 33.66 | 0.27 | 8.63 | 0.264 | 0.0937 | -1.64 | -- | -- | 0.0185 | 0.693 | 19.49 | 1481 | -- | -- |
| 33.54 | 0.27 | 8.64 | 0.224 | -- | -1.16 | -- | 1.02 | 0.00961 | -- | 20.07 | 1222 | -- | -- |
| 46.68 | 0.32 | 8.6 | 0.579 | 0.103 | -- | -0.395 | -- | 0.143 | 2.96 | -- | -- | -- | -- |
| 47.13 | 0.321 | 8.6 | 0.588 | 0.105 | -- | -- | -- | 0.145 | 1.6 | -- | -- | -- | -- |
| 34.05 | 0.272 | 8.62 | 0.281 | -- | -1.53 | -- | -- | 0.0232 | -- | 19.75 | 1259 | -- | -- |
| 35.17 | 0.276 | 8.64 | -- | 0.102 | -1.81 | -- | -- | -0.0271 | 0.882 | 19.7 | 1545 | -- | -- |
| 47.8 | 0.323 | 8.6 | 0.592 | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
| 56.24 | 0.351 | 8.61 | -- | 0.116 | -- | -- | -- | 0.0798 | 1.76 | -- | -- | -- | -- |
| 35.33 | 0.277 | 8.64 | -- | -- | -1.35 | -- | -- | -0.0335 | -- | 19.5 | 2314 | -- | -- |
| 57.06 | 0.353 | 8.61 | -- | -- | -- | -- | -- | 0.0819 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.39 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 16 |
| 23 | 32.66 | temperature | 20 | 1440 | < th | dose dependent | sin | 1 | NA |
| 51 | 32.93 | temperature | 20 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 87 | 33.06 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 97 | 33.11 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 102 | 33.14 | temperature | 20 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 212 | 33.62 | temperature | 20 | 1440 | < th | dose dependent | sin | 18 | NA |
| 231 | 33.68 | temperature | 15 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 241 | 33.70 | temperature | 15 | 4320 | < th | dose dependent | rect. | 23 | 11 |
| 252 | 33.72 | temperature | 15 | 4320 | < th | dose dependent | rect. | 23 | 7 |
| 285 | 33.80 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 286 | 33.80 | temperature | 15 | 4320 | < th | dose dependent | sin | 7 | NA |
| 477 | 34.21 | temperature | 15 | 4320 | < th | dose independent | rect. | 2 | 4 |
| 522 | 34.33 | temperature | 15 | 4320 | > th | dose independent | rect. | 4 | 5 |
| 545 | 34.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 546 | 34.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 550 | 34.40 | temperature | 20 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 631 | 34.57 | temperature | 15 | 4320 | > th | dose independent | rect. | 4 | 2 |
| 639 | 34.59 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 21 |
| 685 | 34.67 | radiation | 30 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 695 | 34.69 | temperature | 15 | 1440 | < th | dose dependent | rect. | 4 | 3 |
| 735 | 34.74 | temperature | 15 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 775 | 34.78 | temperature | 15 | 1440 | > th | dose independent | rect. | 12 | 17 |
| 776 | 34.78 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 12 |
| 791 | 34.80 | temperature | 15 | 1440 | > th | dose independent | rect. | 19 | 10 |
| 794 | 34.80 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 802 | 34.81 | temperature | 15 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 845 | 34.87 | temperature | 15 | 1440 | < th | dose independent | sin | 3 | NA |
| 848 | 34.87 | temperature | 15 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 889 | 34.91 | temperature | 15 | 1440 | > th | dose independent | rect. | 2 | 23 |
| 890 | 34.91 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 915 | 34.94 | temperature | 15 | 1440 | < th | dose independent | rect. | 2 | 16 |
| 917 | 34.94 | temperature | 15 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 924 | 34.95 | temperature | 15 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 928 | 34.95 | temperature | 15 | 1440 | < th | dose independent | rect. | 1 | 19 |
| 936 | 34.96 | temperature | 15 | 1440 | > th | dose independent | rect. | 17 | 12 |
| 943 | 34.97 | temperature | 15 | 1440 | > th | dose independent | no | NA | NA |
| 947 | 34.97 | temperature | 15 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 948 | 34.97 | temperature | 15 | 1440 | > th | dose independent | rect. | 22 | 23 |
| 958 | 34.98 | temperature | 15 | 1440 | > th | dose independent | rect. | 1 | 20 |
| 966 | 34.98 | temperature | 15 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 970 | 34.98 | temperature | 15 | 1440 | > th | dose independent | rect. | 20 | 23 |